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MH669006.1__AXQ61307.1__SEA_LIBERTYBELL_66__00066

Bact-Vir

MH669006.1__AXQ61307.1__SEA_LIBERTYBELL_66__00066

Identity

Accession:
MH669006 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_LibertyBell

TaxID: 2301574

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-89
PDB
Domain cluster: rep: NC_070877.1__YP_010660489.1__PP914_gp123__00123__D21-39_51-92
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.64 48.0 3.28e-01 81.6% 82.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 28.0 3.40e-01 97.4% 61.7%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 29.0 2.85e-01 93.4% 39.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.57 42.0 3.90e-01 80.3% 89.9%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 46.0 3.11e-01 96.1% 82.0%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 44.0 3.49e-01 92.1% 62.7%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.45e-01 96.1% 43.9%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 37.0 2.88e-01 71.1% 80.1%
2qvpC00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 45.0 3.16e-01 96.1% 92.6%
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 39.0 2.83e-01 78.9% 95.8%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.53e-01 84.2% 32.6%
1zj8A03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.53 44.0 3.53e-01 96.1% 90.3%
1q7lA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 42.0 3.31e-01 93.4% 87.5%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.94e-01 89.5% 94.5%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.50e-01 82.9% 31.3%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 3.73e-01 78.9% 100.0%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.52 39.0 4.10e-01 85.5% 93.9%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.19e-01 94.7% 72.2%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.52 37.0 3.33e-01 75.0% 90.4%
4mj3B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.85e-01 92.1% 93.4%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 42.0 3.89e-01 97.4% 99.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.50 39.0 3.78e-01 84.2% 86.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004760 64.1.1.5 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF333 0.73 44.0 5.34e-01 77.6% 100.0%
3561257 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.69 43.0 4.60e-01 82.9% 73.8%
3432156 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.68 44.0 5.00e-01 86.8% 90.9%
3426675 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.63 41.0 4.48e-01 75.0% 84.7%
4023269 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 46.0 4.13e-01 80.3% 99.1%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.59 46.0 4.57e-01 85.5% 98.8%
3993689 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 36.0 3.67e-01 94.7% 65.3%
3801966 252.1.1.2 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7028 0.56 44.0 4.45e-01 93.4% 88.0%
5059099 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.56 42.0 4.07e-01 81.6% 92.0%
3750856 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.56 48.0 3.21e-01 97.4% 85.9%
4054729 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 40.0 4.07e-01 77.6% 98.7%
168845 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.55 49.0 3.33e-01 100.0% 79.2%
3518510 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 40.0 3.60e-01 77.6% 93.3%
3864025 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 45.0 2.98e-01 93.4% 79.0%
3425722 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.54 46.0 4.49e-01 94.7% 100.0%
3514017 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 42.0 3.67e-01 82.9% 83.5%
6230 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 37.0 2.88e-01 71.1% 80.1%
3542657 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.53 38.0 2.96e-01 78.9% 97.9%
1560736 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.52 36.0 3.19e-01 71.1% 70.4%
3439604 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.52 39.0 2.76e-01 81.6% 93.2%
2557227 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.52 40.0 4.01e-01 84.2% 94.8%
3321190 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.67e-01 84.2% 31.8%
4026643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 42.0 4.08e-01 92.1% 85.9%
3239884 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 39.0 3.48e-01 81.6% 87.6%
3673333 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 42.0 3.67e-01 98.7% 95.2%
D2 medium residues 98-182
PDB