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MH669013.1__AXQ62096.1__SEA_SKYSAND_63__00063

Bact-Vir

MH669013.1__AXQ62096.1__SEA_SKYSAND_63__00063

Identity

Accession:
MH669013 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Skysandvirus› Gordonia_phage_Skysand

TaxID: 2301559

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-82
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6v93E01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.61 54.0 3.84e-01 100.0% 34.3%
1l6nA02 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.60 54.0 4.27e-01 100.0% 64.1%
2ce0A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.57 44.0 3.88e-01 100.0% 55.6%
2xguB00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.54 46.0 3.71e-01 100.0% 55.2%
4i62A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 47.0 3.68e-01 100.0% 85.4%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.53 43.0 3.17e-01 100.0% 32.6%
1b25A03 1.10.599.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 0.52 44.0 3.18e-01 100.0% 50.2%
4qozC00 1.10.8.1120 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Histone RNA hairpin-binding protein RNA-binding domain 0.52 39.0 3.75e-01 96.9% 71.2%
1zw8A01 6.10.140.370 Special › Helix non-globular › Helix Hairpins › 0.51 37.0 4.07e-01 95.4% 100.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3509709 1015.1.1.4 ↗ alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › ABC_trans_CmpB 0.63 55.0 4.34e-01 100.0% 46.4%
3923718 109.4.1.163 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYMPK_PTA1_N 0.61 49.0 2.79e-01 96.9% 8.2%
3068418 5063.1.1.1 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.60 52.0 4.78e-01 100.0% 75.0%
2756977 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.60 52.0 4.17e-01 100.0% 49.6%
3957491 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.59 39.0 3.51e-01 93.8% 50.0%
3248723 101.1.1.222 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Hrp3 0.58 45.0 3.62e-01 84.6% 90.0%
140713 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.57 52.0 3.99e-01 100.0% 53.1%
3277377 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.56 49.0 3.23e-01 100.0% 23.7%
4319207 101.1.1.506 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Tnp_P_element_C 0.55 44.0 3.68e-01 100.0% 47.7%
3924089 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.55 46.0 3.65e-01 98.5% 69.0%
3611776 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 47.0 3.75e-01 100.0% 46.4%
3561495 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.54 43.0 3.51e-01 86.2% 87.5%
3198044 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.54 45.0 3.93e-01 100.0% 62.1%
3577308 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.52 40.0 4.28e-01 100.0% 98.2%
2560651 6108.1.1.0 ↗ alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins 0.52 46.0 3.32e-01 98.5% 35.4%
3505237 3573.1.1.1 ↗ alpha arrays › Histone RNA hairpin-binding protein RNA-binding domain › Histone RNA hairpin-binding protein RNA-binding domain › Histone RNA hairpin-binding protein RNA-binding domain › SLBP_RNA_bind 0.52 39.0 3.84e-01 98.5% 74.3%
4082179 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.52 43.0 2.62e-01 89.2% 29.4%
3644011 180.1.1.0 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.52 45.0 3.67e-01 100.0% 59.2%
1105940 231.1.2.1 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ 0.51 36.0 3.37e-01 98.5% 58.5%
3570384 3573.1.1.1 ↗ alpha arrays › Histone RNA hairpin-binding protein RNA-binding domain › Histone RNA hairpin-binding protein RNA-binding domain › Histone RNA hairpin-binding protein RNA-binding domain › SLBP_RNA_bind 0.50 39.0 3.43e-01 100.0% 55.8%
3405145 2002.1.1.119 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CutC 0.50 44.0 2.97e-01 98.5% 99.6%
3511414 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.50 41.0 2.49e-01 89.2% 14.8%