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MH673672.2__AYJ74754.1__phiFa_53__00078

Bact-Vir

MH673672.2__AYJ74754.1__phiFa_53__00078

Identity

Accession:
MH673672 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_phiFa

TaxID: 1400796

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.80 63.0 6.08e-01 84.6% 81.9%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 57.0 5.34e-01 78.5% 64.1%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 53.0 5.72e-01 89.2% 87.3%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 5.25e-01 80.0% 71.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 55.0 4.75e-01 80.0% 62.6%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.31e-01 86.2% 96.0%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.70 52.0 5.22e-01 81.5% 83.8%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 60.0 5.66e-01 100.0% 100.0%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 61.0 4.31e-01 100.0% 45.7%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 35.0 4.05e-01 96.9% 70.8%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 56.0 5.52e-01 98.5% 88.4%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.27e-01 95.4% 88.9%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 36.0 3.95e-01 100.0% 65.5%
2ouwB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 50.0 3.95e-01 83.1% 40.4%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.64 49.0 4.23e-01 83.1% 51.9%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 55.0 4.23e-01 96.9% 75.5%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.63 54.0 5.04e-01 100.0% 97.7%
3fhgA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.63 54.0 4.58e-01 100.0% 64.6%
2lmzA00 1.10.10.2920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 39.0 4.52e-01 81.5% 97.6%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 5.21e-01 100.0% 84.2%
2f46A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 51.0 4.00e-01 92.3% 75.4%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 43.0 4.80e-01 73.8% 98.0%
1pbwB00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.59 49.0 3.61e-01 96.9% 90.3%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.59 45.0 3.40e-01 81.5% 54.1%
3hsqA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.57 47.0 4.67e-01 93.8% 98.5%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.59e-01 78.5% 59.8%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.55 37.0 3.75e-01 87.7% 68.2%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 39.0 3.28e-01 76.9% 69.9%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 37.0 3.57e-01 78.5% 68.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978129 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.86 67.0 4.02e-01 100.0% 13.2%
3273958 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.85 65.0 5.86e-01 80.0% 74.1%
3248091 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.85 65.0 5.84e-01 80.0% 74.1%
3262552 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.84 62.0 5.93e-01 78.5% 82.7%
4609007 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.82 58.0 6.44e-01 84.6% 96.0%
3177082 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.80 60.0 6.21e-01 78.5% 93.3%
3987405 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.79 62.0 5.53e-01 84.6% 62.2%
4990274 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.79 62.0 5.21e-01 83.1% 68.6%
5017220 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 58.0 5.88e-01 80.0% 87.7%
3958076 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.78 61.0 3.88e-01 84.6% 42.8%
3196401 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 58.0 6.19e-01 83.1% 98.2%
5067132 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 5.52e-01 100.0% 79.1%
5040994 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 6.33e-01 100.0% 85.3%
3631439 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.75 68.0 5.93e-01 100.0% 84.2%
3277060 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.74 56.0 5.39e-01 81.5% 86.7%
3840404 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.74 55.0 5.71e-01 80.0% 98.3%
4944767 101.1.2.883 ↗ alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.74 63.0 6.02e-01 100.0% 81.3%
167309 592.2.1.3 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 0.73 63.0 5.47e-01 100.0% 70.5%
4927804 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.73e-01 89.2% 78.7%
4027348 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.73 63.0 6.08e-01 98.5% 93.3%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.73 51.0 5.65e-01 81.5% 98.0%
3342850 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.72 62.0 5.92e-01 95.4% 93.3%
4958343 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.72 62.0 5.59e-01 96.9% 84.4%
4236554 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.70 52.0 5.41e-01 81.5% 88.3%
3504540 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 51.0 5.48e-01 81.5% 94.5%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 50.0 5.41e-01 83.1% 100.0%
4966184 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.69 59.0 5.25e-01 98.5% 74.7%
3942167 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.68 51.0 5.32e-01 83.1% 88.3%
5020331 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 5.42e-01 95.4% 84.6%
4936137 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.68 50.0 5.10e-01 83.1% 84.6%
4955367 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 5.13e-01 87.7% 88.6%
5032110 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.47e-01 95.4% 68.2%
3943344 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.60 46.0 3.68e-01 84.6% 47.9%
5059337 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.60 47.0 3.80e-01 89.2% 49.3%
4147448 148.1.3.4 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.58 45.0 4.14e-01 86.2% 95.6%
4425454 148.1.3.4 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.58 45.0 3.89e-01 83.1% 81.9%
5002943 148.1.3.4 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.58 44.0 4.00e-01 83.1% 95.6%
3686004 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.56 49.0 3.33e-01 98.5% 27.2%
3785906 3911.1.1.1 ↗ extended segments › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Sas10_Utp3 0.54 39.0 3.15e-01 100.0% 38.5%
4424242 102.1.1.34 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_4 0.53 42.0 3.72e-01 93.8% 61.0%
3941457 1203.1.2.3 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › YiaAB 0.52 44.0 3.66e-01 98.5% 75.8%
3788788 2485.1.1.51 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 0.51 40.0 2.84e-01 90.8% 76.3%
D2 high residues 71-177
PDB