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MH673672.2__AYJ74757.1__phiFa_56__00075

Bact-Vir

MH673672.2__AYJ74757.1__phiFa_56__00075

Identity

Accession:
MH673672 ↗
Kingdom:
phage

Quality

74.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-156
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 36.0 3.58e-01 93.3% 50.8%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 4.53e-01 90.8% 100.0%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 4.12e-01 99.2% 89.7%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 32.0 3.74e-01 84.9% 76.8%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 34.0 3.92e-01 87.4% 83.1%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 34.0 3.99e-01 86.6% 88.5%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.56 32.0 3.61e-01 86.6% 73.0%
4lfhD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.88e-01 100.0% 83.5%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.55 32.0 3.66e-01 89.1% 77.6%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.93e-01 100.0% 81.0%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.58e-01 100.0% 75.9%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 4.00e-01 99.2% 88.0%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.54 31.0 3.56e-01 86.6% 79.3%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 4.27e-01 91.6% 88.1%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.60e-01 100.0% 78.4%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.53 36.0 3.54e-01 99.2% 63.4%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.53 35.0 3.75e-01 97.5% 79.8%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 33.0 3.46e-01 87.4% 69.8%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 31.0 3.74e-01 90.8% 93.3%
6bx7A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 35.0 3.67e-01 100.0% 76.4%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 4.25e-01 100.0% 84.5%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 28.0 3.17e-01 78.2% 68.5%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.51 33.0 3.89e-01 100.0% 97.5%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 30.0 3.30e-01 87.4% 71.1%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.50 35.0 3.70e-01 93.3% 80.6%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.94e-01 99.2% 96.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027481 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 35.0 4.22e-01 89.1% 73.8%
5005033 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.64 40.0 4.75e-01 93.3% 93.8%
3436180 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 37.0 4.61e-01 100.0% 98.6%
5020004 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.62 35.0 4.28e-01 87.4% 88.0%
4937330 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.61 33.0 3.61e-01 86.6% 63.2%
4223968 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.60 32.0 3.79e-01 87.4% 75.0%
4193755 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.60 32.0 3.88e-01 87.4% 80.0%
4944755 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.60 35.0 3.90e-01 87.4% 74.4%
4044550 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.60 32.0 3.78e-01 86.6% 76.2%
3988859 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.59 42.0 4.45e-01 95.8% 82.9%
4116209 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.59 35.0 3.89e-01 87.4% 74.4%
4943359 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.59 42.0 3.35e-01 91.6% 37.0%
3817212 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 34.0 4.17e-01 100.0% 95.7%
4413471 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.59 31.0 3.74e-01 87.4% 78.7%
4664239 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.59 34.0 3.84e-01 87.4% 74.4%
4184306 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.59 34.0 3.84e-01 87.4% 74.4%
4534213 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.58 31.0 3.62e-01 87.4% 71.8%
4951741 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.58 34.0 3.81e-01 87.4% 74.4%
5036917 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.58 41.0 3.85e-01 93.3% 58.7%
4982133 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.58 31.0 3.66e-01 87.4% 75.0%
4952855 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.58 38.0 4.36e-01 90.8% 97.5%
5031633 304.8.1.118 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TruB_C_2 0.58 39.0 3.64e-01 93.3% 54.7%
3428351 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.58 40.0 3.45e-01 94.1% 43.6%
5060761 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.57 41.0 4.30e-01 93.3% 82.9%
4981037 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.57 39.0 4.37e-01 93.3% 93.3%
5065805 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.57 33.0 3.73e-01 87.4% 77.6%
5037945 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.56 32.0 3.68e-01 86.6% 76.5%
4928258 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.56 31.0 3.64e-01 87.4% 75.9%
5053336 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 35.0 3.80e-01 88.2% 74.0%
5044954 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 33.0 3.85e-01 86.6% 85.0%
3921212 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.56 35.0 3.75e-01 100.0% 74.0%
3981111 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.55 41.0 3.79e-01 93.3% 60.0%
4039920 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.55 34.0 3.80e-01 99.2% 80.0%
4516768 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.55 33.0 3.42e-01 84.0% 62.7%
4201490 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.55 34.0 3.79e-01 99.2% 80.0%
4067169 304.52.1.1 a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 0.55 32.0 3.64e-01 86.6% 78.8%
3321864 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 35.0 3.66e-01 91.6% 69.1%
5027827 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.54 37.0 4.19e-01 99.2% 96.5%
5063453 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 42.0 3.35e-01 94.1% 40.4%
4933784 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 41.0 3.38e-01 94.1% 43.5%
3689787 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.54 35.0 4.06e-01 90.8% 92.9%
5066425 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.54 30.0 3.46e-01 86.6% 76.2%
3699728 878.1.1.0 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.54 46.0 4.66e-01 93.3% 98.3%
3228954 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.84e-01 100.0% 72.5%
3329478 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.53 34.0 3.45e-01 91.6% 62.5%
3464795 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 36.0 3.61e-01 99.2% 69.2%
3511883 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 39.0 4.17e-01 84.9% 91.3%
2533026 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.52 35.0 3.70e-01 99.2% 76.1%
4549948 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 36.0 3.68e-01 95.8% 72.5%
D2 medium residues 203-291
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rh2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 53.0 4.05e-01 92.1% 42.6%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 48.0 5.00e-01 85.4% 91.4%
1yfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.60 52.0 3.70e-01 96.6% 94.8%
1dofA01 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.59 52.0 3.77e-01 96.6% 97.1%
1q5nA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.59 51.0 3.74e-01 96.6% 97.5%
3a2kA03 3.30.465.60 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 41.0 4.25e-01 77.5% 77.9%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.57 44.0 4.51e-01 86.5% 84.9%
4m5bA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.57 41.0 3.16e-01 76.4% 63.1%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 47.0 3.49e-01 92.1% 68.7%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 2.65e-01 79.8% 51.4%
4tvsA00 3.40.50.12190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 3.17e-01 87.6% 95.5%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 44.0 3.75e-01 96.6% 59.4%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 4.02e-01 93.3% 94.8%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.51 37.0 2.53e-01 76.4% 36.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939311 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.73 40.0 3.73e-01 88.8% 44.5%
3931606 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 42.0 3.87e-01 92.1% 49.6%
4890753 4342.1.1.2 alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › YqgF 0.65 47.0 3.65e-01 95.5% 33.8%
3933404 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 40.0 3.36e-01 92.1% 36.0%
1695454 3517.1.1.1 a+b complex topology › Polymerase acidic protein › Polymerase acidic protein › Polymerase acidic protein › Flu_PA 0.64 50.0 3.21e-01 87.6% 45.6%
4998400 604.39.1.1 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM 0.61 49.0 3.72e-01 87.6% 96.7%
4091817 602.1.1.1 alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.60 54.0 3.86e-01 100.0% 94.4%
4864393 4952.1.1.1 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 0.60 52.0 3.74e-01 95.5% 99.6%
5073251 602.1.1.1 alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.59 53.0 3.77e-01 100.0% 93.7%
4935144 602.1.1.1 alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.58 51.0 3.69e-01 100.0% 94.8%
3694417 602.1.1.1 alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.57 50.0 3.59e-01 100.0% 93.5%
3683227 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.56 42.0 3.25e-01 80.9% 85.4%
3784236 807.1.1.0 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) 0.55 38.0 3.56e-01 70.8% 84.5%
428210 3243.1.1.1 alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.55 42.0 3.20e-01 87.6% 33.2%
4944224 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.54 43.0 3.26e-01 86.5% 99.1%
4977156 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 3.04e-01 94.4% 32.4%
3964537 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.53 42.0 3.24e-01 88.8% 93.6%
3214913 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 47.0 3.76e-01 97.8% 70.0%
3898765 4193.1.1.1 alpha arrays › RUN domain › RUN domain › RUN domain › RUN 0.52 45.0 3.58e-01 94.4% 91.7%
4008602 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.52 28.0 3.05e-01 76.4% 62.7%
4970053 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.51 41.0 3.07e-01 88.8% 37.4%
3547409 604.1.1.153 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.51 45.0 3.46e-01 96.6% 93.0%
4022139 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 28.0 2.99e-01 78.7% 60.0%
4931441 604.39.1.1 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM 0.51 41.0 3.17e-01 87.6% 96.0%
3310974 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.50 37.0 2.72e-01 80.9% 26.4%