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MH673672.2__QKE11351.1__phiFa_471__00084

Bact-Vir

MH673672.2__QKE11351.1__phiFa_471__00084

Identity

Accession:
MH673672 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_phiFa

TaxID: 1400796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-81
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.74 63.0 5.02e-01 93.1% 99.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.70 54.0 5.21e-01 81.9% 82.5%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.69 50.0 3.93e-01 75.0% 59.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.69 40.0 4.11e-01 70.8% 59.7%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 47.0 3.44e-01 73.6% 38.4%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.66 46.0 3.19e-01 72.2% 66.4%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 50.0 3.79e-01 80.6% 43.0%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.63 48.0 3.72e-01 83.3% 63.0%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.62 37.0 2.81e-01 81.9% 24.3%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 42.0 4.62e-01 72.2% 89.7%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.60 53.0 3.85e-01 98.6% 89.2%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 53.0 3.25e-01 98.6% 50.7%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 45.0 3.93e-01 80.6% 99.1%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 3.21e-01 70.8% 41.2%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 45.0 3.99e-01 81.9% 62.5%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.59 51.0 4.38e-01 94.4% 82.7%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 3.69e-01 83.3% 85.6%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.50e-01 83.3% 85.3%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 41.0 3.44e-01 75.0% 92.0%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 40.0 3.49e-01 72.2% 55.1%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 3.02e-01 79.2% 87.7%
4pg4A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 44.0 3.39e-01 83.3% 80.1%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 43.0 3.45e-01 80.6% 95.7%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.12e-01 77.8% 35.1%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.72e-01 81.9% 43.5%
3dghA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 42.0 3.75e-01 87.5% 84.3%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 46.0 3.20e-01 100.0% 95.5%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 3.07e-01 100.0% 81.0%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 44.0 3.41e-01 91.7% 42.0%
1zxzB00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.55 46.0 3.41e-01 94.4% 81.7%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 48.0 3.93e-01 100.0% 91.2%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.33e-01 98.6% 67.2%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 3.35e-01 100.0% 98.3%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.44e-01 91.7% 65.1%
1dgmA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 47.0 3.16e-01 100.0% 53.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 4.10e-01 93.1% 91.9%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.62e-01 84.7% 75.5%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.52 43.0 2.67e-01 93.1% 35.0%
3e3uA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 43.0 3.20e-01 94.4% 77.0%
2pn5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.62e-01 81.9% 96.7%
4aq1A03 2.60.40.3440 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 46.0 3.93e-01 100.0% 95.7%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 43.0 3.33e-01 94.4% 88.3%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.83e-01 83.3% 69.3%
2vr3B02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 3.47e-01 95.8% 100.0%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 3.09e-01 81.9% 43.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3805804 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.77 65.0 6.14e-01 90.3% 100.0%
3609492 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.76 71.0 5.57e-01 100.0% 54.3%
4007854 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.75 52.0 4.93e-01 72.2% 100.0%
3517323 3131.1.1.2 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.72 63.0 5.44e-01 97.2% 93.6%
3843748 220.1.1.48 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl 0.68 48.0 3.90e-01 73.6% 48.1%
3257844 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.65 50.0 3.62e-01 83.3% 78.0%
3255413 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.64 47.0 3.34e-01 100.0% 28.2%
3302660 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.64 49.0 3.45e-01 81.9% 43.2%
3966547 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.64 54.0 4.86e-01 93.1% 95.0%
5051418 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 52.0 4.31e-01 93.1% 85.2%
3164479 3523.1.1.1 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.62 53.0 4.85e-01 94.4% 97.9%
4036688 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.62 47.0 3.67e-01 83.3% 64.2%
5014255 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.61 53.0 4.35e-01 97.2% 77.0%
3617987 4099.1.1.28 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 0.61 47.0 4.48e-01 83.3% 78.8%
3295837 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.61 55.0 4.05e-01 100.0% 60.5%
3378540 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 55.0 4.05e-01 100.0% 60.5%
4846313 1075.1.1.2 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › LptF_LptG 0.61 52.0 4.90e-01 95.8% 95.5%
3658750 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.61 52.0 4.41e-01 97.2% 88.0%
3288021 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.60 48.0 3.58e-01 86.1% 71.1%
3268736 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.60 53.0 3.21e-01 100.0% 30.9%
2520950 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.27e-01 97.2% 63.0%
3262496 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 3.86e-01 77.8% 91.4%
4998749 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 44.0 3.90e-01 79.2% 78.1%
4299660 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 45.0 3.20e-01 83.3% 90.4%
3785687 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.59 47.0 4.06e-01 87.5% 82.6%
3968320 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.59 41.0 2.79e-01 72.2% 27.5%
3936097 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.58 48.0 3.83e-01 94.4% 84.2%
5001443 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.58 49.0 4.01e-01 91.7% 86.2%
4974811 5.1.3.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF26607 0.58 52.0 3.34e-01 100.0% 78.5%
3891853 10.1.1.23 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized 0.58 48.0 3.50e-01 90.3% 88.9%
3971108 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 41.0 3.80e-01 73.6% 92.2%
3768834 214.1.1.3 ↗ a+b two layers › SH2 › SH2 › SH2 › Cbl_N3 0.57 47.0 4.33e-01 90.3% 88.4%
3694446 298.3.1.3 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › MmgE_PrpD_C 0.57 39.0 3.19e-01 72.2% 90.3%
3235057 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.57 43.0 2.77e-01 80.6% 97.8%
4984266 298.3.1.3 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › MmgE_PrpD_C 0.56 38.0 3.22e-01 72.2% 93.8%
4378664 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 41.0 2.79e-01 77.8% 35.4%
4314612 274.1.1.12 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.56 46.0 3.48e-01 93.1% 57.3%
4017268 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 40.0 2.71e-01 77.8% 24.4%
3253057 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.08e-01 75.0% 48.4%
3289062 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 42.0 3.93e-01 81.9% 87.8%
4088884 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 37.0 3.42e-01 70.8% 68.4%
3186869 5.1.3.165 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.54 47.0 3.06e-01 97.2% 55.4%
4095003 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 47.0 2.93e-01 97.2% 44.9%
3711998 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.54 46.0 2.94e-01 100.0% 93.3%
3772995 304.166.1.9 ↗ a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.53 45.0 3.82e-01 95.8% 58.4%
3914739 223.1.1.78 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC 0.52 46.0 3.38e-01 100.0% 51.2%
3273863 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.52 42.0 3.83e-01 93.1% 90.0%
4655639 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.52 40.0 2.54e-01 81.9% 78.3%
4224338 289.1.1.1 ↗ a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.51 43.0 3.21e-01 94.4% 81.6%
3949336 220.1.1.216 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.51 40.0 3.61e-01 91.7% 74.5%