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MH673672.2__QKE11355.1__phiFa_431__00088

Bact-Vir

MH673672.2__QKE11355.1__phiFa_431__00088

Identity

Accession:
MH673672 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_phiFa

TaxID: 1400796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.73 40.0 4.39e-01 81.3% 65.1%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.70 45.0 3.96e-01 97.3% 45.5%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 37.0 4.23e-01 82.7% 75.0%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.65 53.0 4.45e-01 90.7% 78.2%
4lizA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 53.0 4.42e-01 93.3% 76.8%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.64 49.0 4.17e-01 82.7% 51.6%
4aq1A02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 47.0 4.46e-01 82.7% 64.8%
1lwrA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 47.0 4.40e-01 82.7% 62.5%
5irbA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 49.0 4.39e-01 82.7% 60.6%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 37.0 4.00e-01 90.7% 70.8%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.61 43.0 3.41e-01 100.0% 34.8%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 38.0 3.86e-01 86.7% 64.0%
1ulvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 4.00e-01 82.7% 62.8%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 45.0 3.47e-01 82.7% 64.7%
2vr3B02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 3.59e-01 82.7% 94.8%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 41.0 3.53e-01 100.0% 46.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 35.0 4.01e-01 98.7% 87.8%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 3.66e-01 85.3% 46.7%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.81e-01 82.7% 56.1%
1yhpA02 2.60.40.1720 Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 0.57 50.0 4.27e-01 97.3% 80.0%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 4.00e-01 82.7% 66.7%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 3.47e-01 82.7% 76.7%
2l3bA00 2.60.40.2410 Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF12988, DUF3872 0.56 43.0 3.60e-01 82.7% 53.1%
2n1kA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.81e-01 82.7% 61.3%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 44.0 2.76e-01 85.3% 86.1%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 2.74e-01 82.7% 85.8%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 42.0 3.19e-01 86.7% 90.1%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.85e-01 82.7% 71.4%
1a66A00 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.54 41.0 3.20e-01 82.7% 65.7%
2mf9A00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 49.0 3.85e-01 100.0% 58.6%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 3.28e-01 76.0% 47.3%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.55e-01 82.7% 70.6%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.54 49.0 3.74e-01 100.0% 59.0%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.84e-01 93.3% 84.9%
2dbuB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.53 39.0 3.01e-01 81.3% 53.7%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.39e-01 100.0% 45.1%
2qddA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 45.0 3.80e-01 100.0% 97.7%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 3.42e-01 100.0% 51.6%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.51 45.0 3.49e-01 98.7% 60.8%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 33.0 3.14e-01 89.3% 53.3%
2fauA02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.18e-01 81.3% 60.6%
6wwdB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 42.0 3.27e-01 97.3% 45.8%
1js8B02 2.60.310.10 Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain 0.50 40.0 3.69e-01 90.7% 75.2%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 41.0 3.46e-01 90.7% 80.8%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4132400 11.1.1.254 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG5 0.69 53.0 4.41e-01 82.7% 68.5%
4012363 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.68 57.0 4.66e-01 93.3% 76.4%
4929364 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.66 44.0 4.67e-01 100.0% 78.5%
3238035 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 40.0 4.73e-01 98.7% 92.0%
3210730 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 31.0 4.41e-01 78.7% 97.1%
158829 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.65 53.0 4.32e-01 90.7% 71.2%
3171963 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.65 56.0 4.68e-01 96.0% 80.8%
5059262 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 50.0 4.42e-01 82.7% 63.6%
3187961 11.1.5.105 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7077 0.64 49.0 4.18e-01 82.7% 72.8%
5018864 11.1.1.895 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29538 0.64 49.0 4.36e-01 82.7% 67.3%
5030336 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 49.0 4.32e-01 82.7% 56.4%
1487 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 46.0 4.37e-01 82.7% 64.1%
3881059 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.82e-01 82.7% 82.7%
4933358 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.16e-01 82.7% 66.1%
3707452 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.61 50.0 4.01e-01 90.7% 79.7%
3484941 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 4.16e-01 82.7% 60.0%
3773742 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 45.0 3.75e-01 82.7% 44.4%
3973504 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.61 48.0 3.35e-01 86.7% 45.6%
3707092 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 50.0 4.47e-01 93.3% 91.8%
3501370 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.39e-01 82.7% 77.6%
3342794 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 45.0 4.27e-01 100.0% 67.8%
4087213 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 41.0 4.13e-01 97.3% 73.3%
3206409 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 45.0 3.52e-01 97.3% 39.4%
4943498 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 41.0 4.53e-01 82.7% 95.0%
5059327 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 3.85e-01 82.7% 70.4%
5049756 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.91e-01 82.7% 61.1%
3974284 3659.1.1.1 ↗ a+b two layers › MotY N-terminal domain › MotY N-terminal domain › MotY N-terminal domain › MotY_N 0.57 43.0 3.54e-01 82.7% 52.4%
None — 0.57 48.0 3.32e-01 100.0% 71.0%
4014244 4139.1.1.0 ↗ a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like 0.57 44.0 3.68e-01 85.3% 63.0%
3661180 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.57 38.0 3.53e-01 100.0% 53.0%
3480647 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.56 41.0 3.69e-01 80.0% 55.2%
3415568 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 39.0 3.14e-01 72.0% 96.8%
5078987 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.82e-01 82.7% 69.1%
3982925 2004.1.1.262 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF2813 0.56 47.0 3.15e-01 100.0% 83.1%
3891892 11.1.1.351 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD 0.55 42.0 3.72e-01 82.7% 77.3%
3612106 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 33.0 3.37e-01 94.7% 60.0%
3401061 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.43e-01 81.3% 56.9%
3597326 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 41.0 3.90e-01 82.7% 71.1%
3206632 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.54 45.0 4.37e-01 100.0% 82.4%
3678038 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.53 36.0 3.67e-01 100.0% 70.7%
3992484 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.91e-01 100.0% 65.0%
4999185 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 3.08e-01 100.0% 87.5%
3273446 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.67e-01 86.7% 82.7%
3479862 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.67e-01 82.7% 67.8%
3591211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.72e-01 77.3% 95.0%
4994978 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 2.91e-01 100.0% 87.7%
416354 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 42.0 3.56e-01 100.0% 55.4%
5068793 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.35e-01 82.7% 55.8%