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MH673672.2__QKE11356.1__phiFa_421__00089

Bact-Vir

MH673672.2__QKE11356.1__phiFa_421__00089

Identity

Accession:
MH673672 ↗
Kingdom:
phage

Quality

67.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_phiFa

TaxID: 1400796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-28_54-125
PDB
Domain cluster: rep: NC_015297.1__YP_004327588.1__RaPhPE226_gp9__00009__D74-176
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 38.0 3.70e-01 80.6% 49.5%
1fy7A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 49.0 4.43e-01 77.6% 84.3%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 46.0 3.94e-01 73.5% 92.0%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 51.0 4.27e-01 89.8% 89.3%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 47.0 3.25e-01 79.6% 47.0%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 43.0 2.92e-01 73.5% 82.4%
2cjsA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 43.0 3.70e-01 73.5% 78.4%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 50.0 4.36e-01 90.8% 92.5%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 48.0 4.56e-01 89.8% 89.2%
1vq8N00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.59 40.0 3.30e-01 70.4% 81.7%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 44.0 3.14e-01 79.6% 43.0%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 44.0 3.16e-01 79.6% 38.1%
5mghA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 43.0 3.03e-01 79.6% 41.7%
2kzxA00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.57 34.0 3.10e-01 71.4% 43.5%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 44.0 3.17e-01 83.7% 91.4%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.56 40.0 3.46e-01 75.5% 75.8%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 46.0 4.39e-01 89.8% 79.1%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 42.0 3.04e-01 79.6% 33.9%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 45.0 3.94e-01 92.9% 91.9%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 3.95e-01 90.8% 93.8%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 3.80e-01 90.8% 90.3%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.54 39.0 3.93e-01 75.5% 91.9%
1b7yA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 40.0 2.97e-01 79.6% 40.0%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.54 38.0 2.85e-01 75.5% 99.2%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.86e-01 90.8% 90.5%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 3.52e-01 72.4% 64.9%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 40.0 3.09e-01 79.6% 40.1%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 37.0 3.69e-01 72.4% 89.0%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 36.0 2.53e-01 72.4% 66.9%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.25e-01 72.4% 62.5%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.50 38.0 3.34e-01 80.6% 98.0%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 4.01e-01 82.7% 89.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953024 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.73 60.0 5.64e-01 93.9% 73.0%
4996639 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 48.0 3.90e-01 70.4% 100.0%
5062515 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.67 46.0 4.13e-01 71.4% 88.1%
4965849 3435.1.1.9 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 0.66 59.0 4.34e-01 99.0% 98.8%
3998469 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.65 45.0 3.97e-01 71.4% 91.7%
4282587 3195.1.1.1 ↗ extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 0.64 46.0 4.10e-01 74.5% 76.4%
3740184 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 47.0 4.13e-01 77.6% 88.3%
3625014 216.1.1.16 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med27 0.64 45.0 3.77e-01 73.5% 93.5%
4470525 331.3.1.20 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.64 53.0 3.95e-01 89.8% 60.4%
4979282 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.63 48.0 3.92e-01 79.6% 92.8%
4979298 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.63 48.0 3.26e-01 79.6% 48.2%
5011230 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.62 47.0 3.06e-01 79.6% 51.4%
5038181 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.62 47.0 3.18e-01 79.6% 55.5%
4314842 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 49.0 4.85e-01 90.8% 78.1%
3499220 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.62 56.0 4.13e-01 100.0% 76.5%
3235731 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.62 56.0 4.28e-01 100.0% 76.0%
5054248 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.62 47.0 3.22e-01 79.6% 47.6%
4289286 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.60 49.0 4.29e-01 89.8% 87.3%
4016769 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.59 49.0 3.87e-01 89.8% 86.2%
3887886 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.59 54.0 4.01e-01 100.0% 78.8%
3169357 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.59 49.0 4.77e-01 90.8% 90.9%
3249235 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.59 50.0 4.18e-01 93.9% 98.2%
3232376 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.58 38.0 4.04e-01 91.8% 76.5%
3755055 331.1.1.12 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 0.58 51.0 4.58e-01 94.9% 72.6%
3738128 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.58 45.0 3.64e-01 82.7% 89.5%
None — 0.58 44.0 4.23e-01 79.6% 84.5%
3236101 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 49.0 4.89e-01 93.9% 99.0%
3755387 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.57 43.0 3.04e-01 79.6% 42.7%
3934430 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.56 42.0 2.89e-01 79.6% 36.1%
4021057 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.56 42.0 3.07e-01 79.6% 33.8%
3290513 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.56 43.0 3.61e-01 84.7% 91.1%
3268196 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 45.0 3.95e-01 89.8% 91.3%
3278887 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.55 42.0 3.12e-01 80.6% 37.3%
3418844 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.55 42.0 3.01e-01 79.6% 36.5%
None — 0.55 41.0 2.64e-01 79.6% 18.8%
3883756 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 39.0 2.91e-01 73.5% 96.4%
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.55 46.0 4.77e-01 92.9% 98.9%
4098100 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.55 41.0 3.03e-01 79.6% 35.1%
4663376 3593.1.1.1 ↗ a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N 0.54 42.0 2.87e-01 85.7% 80.8%
4929824 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 46.0 4.08e-01 95.9% 91.7%
4340675 3186.1.1.1 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.53 38.0 4.02e-01 83.7% 83.3%
4049822 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.52 38.0 2.59e-01 78.6% 44.5%
3655368 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 33.0 3.66e-01 70.4% 82.7%
3748189 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 35.0 3.85e-01 76.5% 86.3%
4975052 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 35.0 3.28e-01 72.4% 66.9%
3370322 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 36.0 3.76e-01 74.5% 80.0%
4077054 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.50 35.0 3.35e-01 71.4% 82.6%
3263815 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 36.0 3.72e-01 74.5% 85.6%