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MH673673.1__AYJ73869.1__phiLo_17__00017
Bact-VirMH673673.1__AYJ73869.1__phiLo_17__00017
Identity
- Accession:
- MH673673 ↗
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 674-708_728-856
Domain cluster:
rep: IMGVR_UViG_3300009503_000073-3300009503-Ga0123519_1000220325__D659-810
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.59 | 28.0 | 3.44e-01 | 82.3% | 69.8% |
| 1ca1A01 | 1.10.575.10 | Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease | 0.58 | 43.0 | 3.69e-01 | 76.2% | 87.2% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 27.0 | 3.96e-01 | 79.3% | 100.0% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.57 | 27.0 | 3.89e-01 | 79.9% | 97.4% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.57 | 27.0 | 3.28e-01 | 79.9% | 68.2% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.54 | 25.0 | 3.69e-01 | 73.8% | 100.0% |
| 4ms4A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 36.0 | 3.30e-01 | 72.0% | 85.7% |
| 4n03A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 36.0 | 3.35e-01 | 73.8% | 83.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4185839 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.56 | 41.0 | 4.28e-01 | 75.6% | 99.4% |
| 157292 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.56 | 40.0 | 4.24e-01 | 73.8% | 99.3% |
D2
medium
residues 21-125
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.62 | 34.0 | 3.71e-01 | 90.5% | 63.2% |
| 2uvaJ10 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.61 | 42.0 | 3.58e-01 | 71.4% | 88.8% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 42.0 | 4.51e-01 | 71.4% | 98.9% |
| 1fgsA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.59 | 50.0 | 3.58e-01 | 97.1% | 33.1% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.59 | 37.0 | 3.80e-01 | 93.3% | 67.0% |
| 4d81A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 40.0 | 4.17e-01 | 81.0% | 85.1% |
| 3b9wA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.52 | 45.0 | 3.17e-01 | 97.1% | 53.0% |
| 6h5bB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.50 | 38.0 | 3.65e-01 | 91.4% | 69.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950764 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.96 | 92.0 | 6.18e-01 | 99.0% | 32.7% |
| 5006613 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.94 | 90.0 | 5.60e-01 | 100.0% | 22.6% |
| 5021939 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.93 | 75.0 | 8.15e-01 | 82.9% | 100.0% |
| 3900651 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.63 | 45.0 | 4.72e-01 | 75.2% | 91.6% |
| 3524656 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.61 | 44.0 | 4.21e-01 | 76.2% | 70.4% |
| 4987940 | 3542.1.1.0 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases | 0.61 | 47.0 | 3.46e-01 | 81.9% | 84.9% |
| 4998711 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 40.0 | 4.35e-01 | 81.0% | 84.4% |
| 5024799 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.56 | 40.0 | 4.48e-01 | 81.9% | 97.5% |
| 4979542 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.56 | 49.0 | 4.01e-01 | 98.1% | 80.0% |
| 5055569 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.55 | 39.0 | 3.58e-01 | 80.0% | 55.0% |
| 3957454 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.55 | 38.0 | 4.17e-01 | 81.0% | 89.4% |
| 4941579 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.55 | 39.0 | 4.04e-01 | 81.0% | 78.0% |
| 3547164 | 109.3.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 | 0.52 | 40.0 | 3.27e-01 | 81.9% | 73.8% |
| 3688792 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.50 | 38.0 | 2.95e-01 | 80.0% | 76.3% |
D3
medium
residues 349-386_405-493
Domain cluster:
representative