←Back to structures
MH673673.1__AYJ73880.1__phiLo_28__00028
Bact-VirMH673673.1__AYJ73880.1__phiLo_28__00028
Identity
- Accession:
- MH673673 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-130
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06271.19 best | RDD | 95.3 | 5.60e-27 | 95.9% | 97.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.62 | 37.0 | 3.89e-01 | 75.6% | 64.8% |
| 7cafA01 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.56 | 41.0 | 3.21e-01 | 76.4% | 76.6% |
| 7eq1R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 43.0 | 3.38e-01 | 87.0% | 80.0% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 33.0 | 3.39e-01 | 78.9% | 63.2% |
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 42.0 | 3.23e-01 | 88.6% | 82.9% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959601 | 3826.1.1.99 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RDD | 0.86 | 82.0 | 7.67e-01 | 100.0% | 96.6% |
| 5057042 | 605.1.1.355 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › RDD | 0.84 | 80.0 | 7.70e-01 | 100.0% | 97.0% |
| 5050818 | 148.1.1.102 ↗ | alpha arrays › Histone-like › Histone-related › Histone › RDD | 0.84 | 73.0 | 7.61e-01 | 100.0% | 97.4% |
| 3864752 | 376.1.1.113 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Pex2_Pex12 | 0.83 | 61.0 | 6.61e-01 | 76.4% | 94.3% |
| 3396759 | 632.3.1.26 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Pex2_Pex12 | 0.82 | 76.0 | 6.27e-01 | 100.0% | 78.6% |
| 3563765 | 5069.1.3.64 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › RDD | 0.81 | 77.0 | 7.35e-01 | 100.0% | 95.0% |
| 3956103 | 5056.1.1.4 ↗ | extended segments › Gated mechanosensitive channel › Gated mechanosensitive channel › Gated mechanosensitive channel › RDD | 0.81 | 76.0 | 7.35e-01 | 100.0% | 95.6% |
| 3190956 | 192.18.1.4 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › Pex2_Pex12 | 0.80 | 74.0 | 6.55e-01 | 100.0% | 97.1% |
| 3687521 | 7023.1.1.2 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12 | 0.79 | 73.0 | 6.47e-01 | 98.4% | 98.2% |
| 3787087 | 7023.1.1.2 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12 | 0.78 | 71.0 | 6.27e-01 | 97.6% | 97.7% |
| 3838976 | 5056.1.1.4 ↗ | extended segments › Gated mechanosensitive channel › Gated mechanosensitive channel › Gated mechanosensitive channel › RDD | 0.76 | 59.0 | 6.18e-01 | 80.5% | 98.2% |
| 3787607 | 7023.1.1.2 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12 | 0.76 | 69.0 | 5.09e-01 | 100.0% | 63.4% |
| 4518770 | 7023.1.1.2 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12 | 0.76 | 66.0 | 6.84e-01 | 98.4% | 98.3% |
| 3709843 | 7023.1.1.2 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12 | 0.74 | 67.0 | 6.66e-01 | 100.0% | 94.4% |
| 3703271 | 192.18.1.4 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › Pex2_Pex12 | 0.73 | 66.0 | 5.78e-01 | 99.2% | 98.4% |
| 3180613 | 3711.1.1.23 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Pex2_Pex12 | 0.73 | 66.0 | 5.62e-01 | 100.0% | 91.6% |
| 3294447 | 3711.1.1.23 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Pex2_Pex12 | 0.73 | 67.0 | 5.61e-01 | 100.0% | 85.9% |
| 3946092 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.68 | 29.0 | 4.05e-01 | 76.4% | 85.5% |
| 3282500 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.56 | 46.0 | 3.50e-01 | 89.4% | 71.8% |
| 4937804 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 39.0 | 3.91e-01 | 71.5% | 82.4% |
| 3286823 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.53 | 33.0 | 3.41e-01 | 91.1% | 63.3% |