←Back to structures
MH673673.1__AYJ74009.1__phiLo_157__00157
Bact-VirMH673673.1__AYJ74009.1__phiLo_157__00157
Identity
- Accession:
- MH673673 ↗
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Cluster
View cluster (59 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 51-187
Domain cluster:
rep: MN698246.1__QGZ18180.1__HTVC112P_gp03__00003__D120-243
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.79 | 64.0 | 5.61e-01 | 100.0% | 59.3% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.74 | 69.0 | 5.83e-01 | 100.0% | 68.0% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.70 | 47.0 | 5.00e-01 | 96.4% | 78.2% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.61 | 50.0 | 4.39e-01 | 100.0% | 58.9% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.60 | 47.0 | 4.31e-01 | 97.8% | 62.5% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.57 | 51.0 | 3.75e-01 | 95.6% | 53.2% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 45.0 | 4.38e-01 | 92.0% | 83.9% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.52 | 47.0 | 3.87e-01 | 97.8% | 81.6% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 42.0 | 4.14e-01 | 97.8% | 80.3% |
| 5t5sA01 | 3.10.310.40 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.52 | 30.0 | 3.07e-01 | 100.0% | 56.6% |
| 3b0xA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.51 | 30.0 | 3.70e-01 | 94.9% | 92.0% |
| 3ihjA03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 38.0 | 3.15e-01 | 75.9% | 70.3% |
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.51 | 39.0 | 3.93e-01 | 83.2% | 78.7% |
| 4lg3A01 | 3.10.310.90 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.51 | 33.0 | 3.36e-01 | 93.4% | 66.4% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955488 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.81 | 56.0 | 6.25e-01 | 100.0% | 89.1% |
| 4942551 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.78 | 64.0 | 5.33e-01 | 100.0% | 53.2% |
| 4555637 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.75 | 58.0 | 5.21e-01 | 100.0% | 60.6% |
| 5064206 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.75 | 70.0 | 5.56e-01 | 100.0% | 63.5% |
| 5012280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.75 | 62.0 | 5.34e-01 | 100.0% | 58.0% |
| 3602325 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.72 | 49.0 | 5.16e-01 | 100.0% | 76.8% |
| 5010105 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.70 | 51.0 | 5.35e-01 | 98.5% | 82.4% |
| 4660505 | 2008.1.1.186 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_9 | 0.70 | 51.0 | 5.04e-01 | 97.8% | 71.0% |
| 4384457 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.69 | 46.0 | 4.75e-01 | 92.0% | 71.5% |
| 5053235 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 55.0 | 4.46e-01 | 98.5% | 46.9% |
| 4329875 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.66 | 56.0 | 5.90e-01 | 100.0% | 100.0% |
| 5016968 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 48.0 | 4.92e-01 | 97.8% | 80.0% |
| 5081637 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 49.0 | 4.82e-01 | 95.6% | 78.6% |
| 4945329 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.60 | 52.0 | 4.44e-01 | 92.0% | 85.6% |
| 5081063 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 56.0 | 4.73e-01 | 100.0% | 61.8% |
| 3276755 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.60 | 50.0 | 3.64e-01 | 100.0% | 32.6% |
| 3781580 | 5104.1.1.2 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 | 0.60 | 34.0 | 3.70e-01 | 98.5% | 64.7% |
| 3354448 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.59 | 47.0 | 4.86e-01 | 97.1% | 88.5% |
| 4612013 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.59 | 31.0 | 3.58e-01 | 96.4% | 69.5% |
| 4954341 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.59 | 48.0 | 4.10e-01 | 100.0% | 54.9% |
| 4992664 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.58 | 37.0 | 3.63e-01 | 98.5% | 58.6% |
| 3788787 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.58 | 36.0 | 3.52e-01 | 99.3% | 55.3% |
| 5073529 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 40.0 | 4.49e-01 | 94.9% | 92.4% |
| 4999640 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.58 | 53.0 | 4.58e-01 | 100.0% | 65.7% |
| 5055137 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.58 | 36.0 | 3.57e-01 | 98.5% | 57.3% |
| 4446833 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.57 | 51.0 | 4.90e-01 | 94.2% | 91.0% |
| 3698250 | 7600.1.1.0 ↗ | a/b three-layered sandwiches › Chromo domain-containing protein 1 (Chp1) domain II › Chromo domain-containing protein 1 (Chp1) domain II › Chromo domain-containing protein 1 (Chp1) domain II | 0.56 | 39.0 | 4.10e-01 | 97.8% | 77.6% |
| 3451791 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.56 | 45.0 | 3.60e-01 | 83.2% | 56.5% |
| 4998336 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.56 | 51.0 | 4.99e-01 | 97.1% | 97.2% |
| 4968040 | 2008.1.1.235 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 | 0.55 | 47.0 | 4.83e-01 | 97.1% | 98.5% |
| 4931776 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 45.0 | 4.20e-01 | 100.0% | 71.2% |
| 3365306 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 42.0 | 3.62e-01 | 83.9% | 75.6% |
| 3329729 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.54 | 34.0 | 3.38e-01 | 99.3% | 60.0% |
| 3326057 | 7581.1.1.4 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N | 0.53 | 37.0 | 3.83e-01 | 100.0% | 75.4% |
| 4981995 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 46.0 | 4.44e-01 | 98.5% | 99.4% |
| 4318793 | 2003.1.5.196 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM5-TYW2_MTfase, tRNA_U5-meth_tr | 0.52 | 44.0 | 3.10e-01 | 89.8% | 47.2% |
| None | — | 0.51 | 43.0 | 3.07e-01 | 89.8% | 47.8% | |
| 3251448 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 40.0 | 2.81e-01 | 83.9% | 56.1% |
| 3570975 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.51 | 42.0 | 4.05e-01 | 97.8% | 78.1% |
| 3279112 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.51 | 36.0 | 3.34e-01 | 76.6% | 58.2% |
| 4145191 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.51 | 43.0 | 3.05e-01 | 89.8% | 47.8% |
| 4642171 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 42.0 | 3.67e-01 | 97.8% | 58.6% |
| 3263345 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 40.0 | 3.00e-01 | 83.9% | 64.4% |
D2
medium
residues 1-50
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ediA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.60 | 48.0 | 3.45e-01 | 92.0% | 83.7% |
| 1vg5A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.50 | 33.0 | 3.00e-01 | 80.0% | 46.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959053 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.90 | 57.0 | 3.74e-01 | 74.0% | 17.8% |
| 4948672 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.52 | 37.0 | 2.86e-01 | 82.0% | 53.1% |