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MH673674.1__AYJ74785.1__phiMa_02__00002

Bact-Vir

MH673674.1__AYJ74785.1__phiMa_02__00002

Identity

Accession:
MH673674 ↗
Kingdom:
phage

Quality

77.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_phiMa

TaxID: 2301537

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 151-228
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 45.0 4.21e-01 78.2% 89.8%
5e75A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 43.0 2.65e-01 76.9% 49.8%
7pjdC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 44.0 3.43e-01 80.8% 66.7%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 48.0 4.85e-01 97.4% 93.7%
1gyzA00 1.10.1900.20 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Ribosomal protein L20, C-terminal domain 0.57 36.0 3.97e-01 75.6% 81.7%
2pdoA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 40.0 3.51e-01 75.6% 58.1%
1lbuA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.56 39.0 3.82e-01 71.8% 91.7%
3otnA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 40.0 2.54e-01 76.9% 53.7%
2nr7A00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.56 41.0 3.23e-01 82.1% 98.5%
2a7oA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.55 38.0 3.53e-01 71.8% 72.0%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.52 42.0 3.75e-01 88.5% 85.0%
6bfnB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 44.0 3.32e-01 97.4% 47.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4036297 2004.1.1.6 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY 0.66 45.0 2.66e-01 70.5% 12.7%
4057369 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.63 43.0 3.55e-01 87.2% 39.3%
4561443 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.61 40.0 4.52e-01 71.8% 88.3%
182108 108.1.1.45 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PLCB1-4-like_EFh 0.57 36.0 3.64e-01 76.9% 61.7%
3585358 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.72e-01 92.3% 51.3%
1194681 4953.1.1.2 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.55 44.0 4.10e-01 98.7% 68.6%
4027268 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.54 35.0 3.43e-01 88.5% 60.0%
3191600 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.53 46.0 3.33e-01 100.0% 66.5%
3467205 192.18.1.0 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.52 45.0 2.76e-01 94.9% 65.0%
3715903 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 39.0 3.44e-01 83.3% 67.2%
3681567 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 2.67e-01 94.9% 55.8%
4934741 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 37.0 2.53e-01 76.9% 44.7%
3679012 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.87e-01 91.0% 43.0%
3941557 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.51 37.0 2.71e-01 80.8% 41.2%
3672945 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 2.93e-01 89.7% 40.4%
4018838 601.1.2.114 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › FIT 0.50 41.0 3.13e-01 91.0% 62.6%
D2 medium residues 6-93
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.73 44.0 5.30e-01 72.7% 94.6%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 46.0 3.86e-01 77.3% 69.9%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 36.0 4.12e-01 89.8% 81.0%
1w36B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 50.0 3.70e-01 98.9% 81.0%
3h1nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 42.0 3.89e-01 80.7% 86.7%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.15e-01 83.0% 49.0%
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 43.0 2.93e-01 89.8% 30.4%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 37.0 3.41e-01 71.6% 88.3%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 37.0 3.58e-01 71.6% 89.1%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.42e-01 87.5% 61.4%
2vj4A01 1.10.10.2060 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 42.0 4.18e-01 98.9% 88.9%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.51 35.0 3.54e-01 71.6% 82.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934022 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.63 46.0 4.48e-01 79.5% 94.0%
3928667 3277.2.1.1 ↗ alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.60 42.0 4.15e-01 73.9% 86.3%
3837777 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.58 40.0 3.82e-01 72.7% 88.6%
3483996 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 39.0 3.67e-01 71.6% 82.7%
3927056 603.1.1.1 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.55 41.0 3.15e-01 78.4% 81.0%
3828 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.55 38.0 3.60e-01 72.7% 75.0%
4012701 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 40.0 3.39e-01 80.7% 71.0%
3271310 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.52 38.0 3.51e-01 76.1% 95.7%
3838593 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 37.0 3.35e-01 75.0% 60.0%
D3 medium residues 102-138
PDB