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MH673674.1__AYJ74788.1__phiMa_05__00005

Bact-Vir

MH673674.1__AYJ74788.1__phiMa_05__00005

Identity

Accession:
MH673674 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-123
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.78 55.0 4.44e-01 97.3% 40.9%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.78 57.0 5.67e-01 94.7% 74.0%
6dcjA02 1.25.40.650 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.76 59.0 5.23e-01 97.3% 58.7%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 61.0 3.96e-01 85.3% 87.9%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.75 59.0 4.85e-01 97.3% 49.2%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 57.0 4.58e-01 81.3% 44.4%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.74 54.0 4.61e-01 81.3% 48.7%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.73 58.0 4.33e-01 84.0% 37.0%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 54.0 4.38e-01 81.3% 76.2%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.71 54.0 4.06e-01 82.7% 77.0%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 67.0 4.82e-01 100.0% 82.6%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 64.0 5.58e-01 100.0% 79.6%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.70 64.0 4.72e-01 97.3% 50.0%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.70 63.0 5.16e-01 97.3% 79.4%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.69 58.0 4.07e-01 89.3% 50.2%
3pvtA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 62.0 4.09e-01 100.0% 84.9%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.69 58.0 4.92e-01 89.3% 74.4%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 62.0 5.37e-01 100.0% 79.8%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.68 56.0 5.19e-01 100.0% 71.4%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 51.0 5.19e-01 96.0% 81.3%
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 61.0 4.97e-01 100.0% 69.1%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.67 58.0 5.35e-01 93.3% 78.9%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 60.0 5.22e-01 100.0% 74.1%
2b5dX02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.66 54.0 4.59e-01 85.3% 70.2%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 57.0 5.10e-01 93.3% 83.7%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 41.0 4.79e-01 78.7% 85.7%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.66 58.0 5.14e-01 93.3% 73.5%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.66 56.0 4.74e-01 90.7% 77.8%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.65 55.0 4.65e-01 90.7% 86.8%
6ljaA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.65 58.0 3.70e-01 100.0% 24.7%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 57.0 5.08e-01 100.0% 79.6%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.64 54.0 4.05e-01 90.7% 66.9%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.64 58.0 4.87e-01 100.0% 60.8%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.60 56.0 4.81e-01 100.0% 73.7%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.60 53.0 4.24e-01 100.0% 50.0%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.60 52.0 4.64e-01 100.0% 67.9%
4ksaA02 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.60 54.0 4.34e-01 97.3% 81.0%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 52.0 4.58e-01 100.0% 87.5%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 52.0 4.75e-01 94.7% 89.8%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.57 47.0 3.86e-01 90.7% 59.3%
2nxpB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.56 48.0 3.96e-01 100.0% 51.0%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.55 49.0 4.14e-01 100.0% 81.9%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.55 41.0 3.31e-01 78.7% 85.1%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.54 46.0 4.48e-01 94.7% 82.4%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 40.0 2.72e-01 77.3% 68.6%
2af0A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.54 45.0 4.41e-01 90.7% 92.5%
2v0cA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.53 45.0 3.66e-01 100.0% 48.4%
1wbeA01 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.52 46.0 3.48e-01 100.0% 80.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969049 601.4.1.3 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 0.82 59.0 4.46e-01 74.7% 73.3%
3738358 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 62.0 6.22e-01 92.0% 81.3%
3389567 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.79 60.0 4.33e-01 78.7% 65.3%
3588719 564.1.1.0 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors 0.79 53.0 5.72e-01 88.0% 80.0%
3318780 109.4.1.843 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM 0.78 72.0 4.98e-01 100.0% 55.7%
3312807 3922.1.1.7 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auxin_canalis 0.76 58.0 4.65e-01 81.3% 46.2%
4266978 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.74 66.0 6.25e-01 100.0% 88.9%
4053140 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.73 62.0 4.31e-01 89.3% 84.1%
3738219 603.1.1.97 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.72 67.0 4.68e-01 100.0% 78.6%
4530490 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.71 62.0 5.89e-01 97.3% 84.4%
4250281 593.1.1.1 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.71 51.0 3.99e-01 74.7% 41.3%
3707377 604.12.1.73 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27107 0.71 62.0 5.11e-01 92.0% 59.2%
3167993 603.1.1.97 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.71 67.0 4.64e-01 100.0% 74.1%
3478399 604.8.1.0 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.71 61.0 4.18e-01 90.7% 48.3%
3791 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.71 67.0 4.82e-01 100.0% 82.6%
3224585 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.70 62.0 5.31e-01 93.3% 70.0%
4045134 601.4.1.3 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 0.70 59.0 4.81e-01 89.3% 76.9%
3927006 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.70 61.0 5.73e-01 93.3% 84.4%
4170989 150.1.1.59 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Coat_F 0.69 59.0 4.56e-01 89.3% 91.3%
4001318 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 56.0 5.69e-01 93.3% 86.7%
1173431 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.69 58.0 4.00e-01 89.3% 47.0%
3605285 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 60.0 4.74e-01 93.3% 51.7%
3377896 109.4.1.588 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FPL 0.69 62.0 4.02e-01 100.0% 48.1%
3579321 109.4.1.2714 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_8, TPR_16 0.68 61.0 3.70e-01 100.0% 17.3%
4001230 109.4.1.1264 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16 0.68 60.0 4.08e-01 100.0% 28.4%
3790050 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.68 60.0 3.66e-01 100.0% 16.5%
3832769 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.68 60.0 4.60e-01 93.3% 51.0%
3621552 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.68 60.0 4.03e-01 100.0% 27.3%
3744696 603.1.1.2 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Not3 0.68 62.0 5.43e-01 97.3% 71.4%
3918098 604.6.1.57 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › Not3 0.68 62.0 5.43e-01 97.3% 71.4%
3627942 3755.4.1.1 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.67 50.0 3.92e-01 82.7% 88.0%
4597667 135.1.1.1 alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.66 49.0 3.97e-01 77.3% 83.0%
3996264 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.66 49.0 3.87e-01 81.3% 90.6%
4511937 603.1.1.139 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE_C, PF27021 0.66 62.0 4.81e-01 100.0% 94.0%
3989573 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.66 58.0 4.06e-01 93.3% 48.8%
3510367 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.66 62.0 4.74e-01 100.0% 94.8%
3442429 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.66 61.0 4.42e-01 98.7% 90.3%
3581778 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.65 59.0 4.07e-01 100.0% 37.9%
4945412 601.14.1.13 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › PAS_10 0.65 54.0 3.99e-01 89.3% 58.4%
4311111 192.29.1.160 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › YPEB_N 0.65 61.0 4.52e-01 100.0% 88.2%
1716751 103.4.1.5 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.63 44.0 4.28e-01 73.3% 66.3%
3794988 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.62 54.0 4.55e-01 96.0% 66.4%
3393609 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 57.0 4.72e-01 100.0% 76.0%
3410683 4320.1.1.1 alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 0.61 55.0 4.29e-01 100.0% 47.7%
5041261 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 57.0 4.58e-01 100.0% 63.0%
3639947 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.61 54.0 4.05e-01 100.0% 97.3%
3702979 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 52.0 3.28e-01 100.0% 48.3%
3473134 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.60 53.0 4.02e-01 98.7% 49.1%
3678972 604.6.1.38 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › CASP_dom 0.59 50.0 4.44e-01 96.0% 78.9%
3985755 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 32.0 3.50e-01 93.3% 65.0%
4156333 109.4.1.206 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO 0.58 49.0 3.98e-01 96.0% 65.3%
3838667 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.58 50.0 4.87e-01 90.7% 88.7%
3918963 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.56 50.0 3.31e-01 100.0% 60.6%
3273491 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.56 41.0 2.65e-01 78.7% 92.4%
3903825 611.3.1.0 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.54 49.0 4.74e-01 97.3% 88.2%
3266812 3291.1.1.211 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › EMC3_TMCO1 0.54 43.0 3.40e-01 88.0% 94.4%
3638713 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 43.0 2.64e-01 89.3% 50.6%
3527434 6006.1.1.6 extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF27661 0.53 43.0 3.44e-01 89.3% 79.4%
5053066 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.50 43.0 3.05e-01 97.3% 47.7%