←Back to structures
MH673674.1__AYJ74842.1__phiMa_59__00059
Bact-VirMH673674.1__AYJ74842.1__phiMa_59__00059
Identity
- Accession:
- MH673674 ↗
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Cluster
View cluster (37 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-178
Domain cluster:
rep: OL597546.1__UUB23297.1__X__00001__D24-147
D2
high
residues 249-308
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 53.0 | 5.70e-01 | 81.7% | 95.8% |
| 3u5ei01 | 1.10.10.1760 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 | 0.73 | 53.0 | 5.11e-01 | 83.3% | 68.7% |
| 2cmpA00 | 1.10.10.1400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif | 0.72 | 52.0 | 5.42e-01 | 81.7% | 83.9% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 59.0 | 6.06e-01 | 91.7% | 100.0% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.68 | 57.0 | 5.04e-01 | 96.7% | 72.8% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.68 | 56.0 | 5.02e-01 | 96.7% | 64.0% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.68 | 55.0 | 3.79e-01 | 90.0% | 31.2% |
| 3d5lA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 52.0 | 5.48e-01 | 88.3% | 100.0% |
| 1r4wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.67 | 53.0 | 3.66e-01 | 88.3% | 28.8% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 47.0 | 4.99e-01 | 88.3% | 97.9% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 50.0 | 4.15e-01 | 88.3% | 45.2% |
| 3aqtA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 54.0 | 3.84e-01 | 96.7% | 56.9% |
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 47.0 | 5.00e-01 | 88.3% | 100.0% |
| 2g9wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 4.69e-01 | 83.3% | 79.1% |
| 2v8pA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.64 | 46.0 | 3.52e-01 | 86.7% | 31.0% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 45.0 | 4.52e-01 | 80.0% | 95.2% |
| 2wcrB00 | 3.10.129.140 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein | 0.62 | 51.0 | 3.97e-01 | 96.7% | 52.7% |
| 1y88A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.62 | 48.0 | 4.86e-01 | 90.0% | 86.4% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 43.0 | 3.28e-01 | 75.0% | 40.5% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.61 | 46.0 | 3.99e-01 | 83.3% | 56.7% |
| 3l8nA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.61 | 44.0 | 4.06e-01 | 75.0% | 67.1% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 49.0 | 3.94e-01 | 98.3% | 43.4% |
| 2dt5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 4.72e-01 | 96.7% | 97.3% |
| 3keoA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 4.67e-01 | 95.0% | 88.9% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.60 | 50.0 | 3.34e-01 | 100.0% | 82.8% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 46.0 | 3.59e-01 | 88.3% | 92.2% |
| 3lkdB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.58 | 47.0 | 3.47e-01 | 96.7% | 83.2% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 45.0 | 4.35e-01 | 91.7% | 89.0% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.57 | 45.0 | 4.04e-01 | 88.3% | 89.5% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 47.0 | 4.22e-01 | 93.3% | 81.6% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.56 | 40.0 | 3.21e-01 | 90.0% | 35.9% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 47.0 | 3.71e-01 | 100.0% | 95.7% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 42.0 | 4.32e-01 | 95.0% | 86.4% |
| 2olpA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 45.0 | 3.51e-01 | 100.0% | 94.0% |
| 3gruA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.54 | 39.0 | 3.56e-01 | 80.0% | 82.6% |
| 2be4A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 43.0 | 3.83e-01 | 93.3% | 100.0% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.52 | 43.0 | 4.07e-01 | 96.7% | 84.4% |
| 1rz4A01 | 1.25.40.250 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 | 0.52 | 43.0 | 3.49e-01 | 95.0% | 53.3% |
| 4ui9Y03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 43.0 | 3.93e-01 | 93.3% | 93.8% |
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.51 | 38.0 | 3.71e-01 | 86.7% | 75.8% |
| 2d4uB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.50 | 41.0 | 3.23e-01 | 100.0% | 66.5% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3706397 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 61.0 | 5.96e-01 | 93.3% | 80.0% |
| 2392755 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.76 | 53.0 | 4.66e-01 | 73.3% | 83.7% |
| 5037497 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.76 | 64.0 | 4.30e-01 | 95.0% | 25.8% |
| 4073017 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 57.0 | 5.88e-01 | 86.7% | 100.0% |
| 4479187 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.72 | 57.0 | 5.58e-01 | 95.0% | 83.1% |
| 4567840 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.71 | 57.0 | 5.93e-01 | 88.3% | 100.0% |
| 4941280 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.71 | 59.0 | 4.56e-01 | 95.0% | 44.3% |
| 5045142 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 58.0 | 5.35e-01 | 93.3% | 75.6% |
| 3327522 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.70 | 58.0 | 5.59e-01 | 96.7% | 82.9% |
| 4940618 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.69 | 59.0 | 5.40e-01 | 96.7% | 78.8% |
| 5042298 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.69 | 59.0 | 4.23e-01 | 96.7% | 56.7% |
| 3947132 | 101.1.1.109 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF2543 | 0.69 | 58.0 | 5.39e-01 | 95.0% | 77.3% |
| 5042947 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.68 | 51.0 | 5.35e-01 | 95.0% | 100.0% |
| 4940179 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.68 | 59.0 | 4.40e-01 | 100.0% | 41.2% |
| 5053497 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 52.0 | 5.27e-01 | 86.7% | 90.0% |
| 3334378 | 101.35.1.32 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF25874 | 0.68 | 53.0 | 5.50e-01 | 90.0% | 98.2% |
| 4940271 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.68 | 57.0 | 5.07e-01 | 96.7% | 70.0% |
| 4942687 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 56.0 | 5.19e-01 | 96.7% | 73.8% |
| 5025361 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.67 | 54.0 | 5.04e-01 | 91.7% | 74.4% |
| 4948021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 55.0 | 5.12e-01 | 95.0% | 86.3% |
| 4494818 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 55.0 | 5.31e-01 | 95.0% | 85.7% |
| 3867244 | 4953.1.1.37 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF4603 | 0.66 | 53.0 | 4.80e-01 | 90.0% | 74.7% |
| 3404571 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.66 | 56.0 | 5.20e-01 | 100.0% | 81.2% |
| 5073255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 52.0 | 4.47e-01 | 88.3% | 56.0% |
| 5007881 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.66 | 54.0 | 4.90e-01 | 98.3% | 81.1% |
| 3894192 | 101.1.1.345 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_KIF26A_B_1st | 0.66 | 54.0 | 5.02e-01 | 95.0% | 96.2% |
| 5074539 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 51.0 | 4.92e-01 | 86.7% | 87.1% |
| 3543711 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.65 | 56.0 | 5.05e-01 | 100.0% | 70.6% |
| 3984964 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.65 | 52.0 | 4.94e-01 | 95.0% | 73.3% |
| 5054311 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.65 | 54.0 | 4.88e-01 | 98.3% | 80.9% |
| 5042147 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.65 | 52.0 | 4.90e-01 | 95.0% | 73.8% |
| 4028725 | 102.1.2.23 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Stevor | 0.65 | 54.0 | 4.87e-01 | 90.0% | 68.8% |
| 3188842 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.65 | 42.0 | 3.34e-01 | 70.0% | 31.2% |
| 2141309 | 191.1.1.10 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6 | 0.65 | 46.0 | 3.66e-01 | 75.0% | 47.9% |
| 4128053 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.64 | 51.0 | 5.26e-01 | 93.3% | 100.0% |
| 4145773 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.64 | 51.0 | 5.25e-01 | 93.3% | 100.0% |
| 5013996 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 51.0 | 4.87e-01 | 95.0% | 78.7% |
| 3283805 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.64 | 53.0 | 5.18e-01 | 100.0% | 87.1% |
| 3858057 | 101.42.1.1 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 | 0.63 | 55.0 | 5.09e-01 | 96.7% | 86.7% |
| 4580730 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.63 | 52.0 | 5.25e-01 | 93.3% | 100.0% |
| 4957698 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.62 | 50.0 | 4.02e-01 | 93.3% | 62.8% |
| 3504478 | 101.1.2.81 ↗ | alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N | 0.61 | 49.0 | 4.47e-01 | 93.3% | 80.0% |
| 3531209 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.60 | 45.0 | 4.34e-01 | 83.3% | 71.4% |
| 3451551 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.60 | 48.0 | 4.57e-01 | 93.3% | 76.0% |
| 5042180 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 45.0 | 4.26e-01 | 88.3% | 69.6% |
| 4943929 | 2004.1.1.277 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HerA_C | 0.59 | 48.0 | 3.05e-01 | 95.0% | 26.2% |
| 4667980 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.57e-01 | 95.0% | 85.3% |
| 3290705 | 101.1.2.81 ↗ | alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N | 0.58 | 47.0 | 4.30e-01 | 95.0% | 88.2% |
| None | — | 0.57 | 46.0 | 4.38e-01 | 93.3% | 98.7% | |
| 4991913 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.56 | 48.0 | 3.34e-01 | 100.0% | 66.5% |
| 3892460 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.54 | 39.0 | 3.92e-01 | 91.7% | 76.7% |
| 3773905 | 604.3.1.33 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › RSLD_CPSF6 | 0.54 | 45.0 | 4.25e-01 | 98.3% | 90.7% |
| 3796824 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.54 | 44.0 | 4.26e-01 | 96.7% | 84.3% |