←Back to structures
AXN53390.1
Arc-VirMH674343__AXN53390.1__Drs3-00009__00009
Identity
- Accession:
- MH674343 ↗
- Protein ID:
- AXN53390.1 ↗
- Kingdom:
- archaea
Quality
87.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Methanobavirales›
Anaerodiviridae›
Metforvirus›
Methanobacterium_virus_Drs3
TaxID: 1430441
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-157
Domain cluster:
rep: IMGVR_UViG_3300001520_000261-3300001520-rank44_10346183__D3-66_101-183
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 38.0 | 4.68e-01 | 93.2% | 98.7% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 26.0 | 3.42e-01 | 92.4% | 72.5% |
| 3k59A01 | 2.40.50.590 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel | 0.59 | 36.0 | 4.37e-01 | 97.0% | 94.1% |
| 1o7iB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 40.0 | 4.31e-01 | 100.0% | 82.5% |
| 1fguB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 41.0 | 4.52e-01 | 100.0% | 97.1% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 34.0 | 3.69e-01 | 97.0% | 73.4% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 38.0 | 4.24e-01 | 97.0% | 95.9% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 36.0 | 4.03e-01 | 100.0% | 87.4% |
| 4damC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 36.0 | 4.03e-01 | 95.5% | 92.0% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 39.0 | 4.17e-01 | 87.9% | 91.4% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 36.0 | 3.55e-01 | 72.0% | 83.8% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 26.0 | 3.24e-01 | 73.5% | 82.4% |
| 7z0sE01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.51 | 36.0 | 3.84e-01 | 74.2% | 95.8% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.50 | 36.0 | 3.44e-01 | 74.2% | 81.2% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 40.0 | 4.14e-01 | 87.9% | 91.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3924626 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.63 | 32.0 | 3.90e-01 | 89.4% | 74.1% |
| 5069068 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 42.0 | 4.87e-01 | 98.5% | 97.9% |
| 4602887 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 35.0 | 4.42e-01 | 96.2% | 100.0% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.60 | 27.0 | 3.46e-01 | 92.4% | 72.9% |
| 3268888 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.60 | 40.0 | 4.70e-01 | 94.7% | 98.9% |
| 3287532 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 39.0 | 4.43e-01 | 98.5% | 89.0% |
| 3279407 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 40.0 | 4.39e-01 | 97.7% | 83.6% |
| 4524129 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.58 | 33.0 | 3.82e-01 | 89.4% | 76.8% |
| 3838288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 39.0 | 4.14e-01 | 100.0% | 78.3% |
| 5055028 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 42.0 | 4.50e-01 | 100.0% | 89.1% |
| 4416182 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.58 | 32.0 | 3.51e-01 | 86.4% | 66.7% |
| 4562544 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 40.0 | 4.31e-01 | 99.2% | 83.5% |
| 3210094 | 2.1.1.289 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon, Rep-A_N | 0.57 | 43.0 | 3.33e-01 | 100.0% | 36.5% |
| 3733907 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.57 | 43.0 | 4.31e-01 | 100.0% | 77.0% |
| 5019817 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 39.0 | 4.23e-01 | 100.0% | 83.6% |
| 3499841 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 30.0 | 3.53e-01 | 75.0% | 73.3% |
| 4600598 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 39.0 | 4.19e-01 | 100.0% | 81.7% |
| 5001821 | 2.1.1.111 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB | 0.56 | 38.0 | 4.21e-01 | 100.0% | 87.6% |
| 5030410 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 38.0 | 4.35e-01 | 98.5% | 97.9% |
| 3725926 | 2.1.1.94 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C | 0.55 | 35.0 | 4.18e-01 | 100.0% | 98.8% |
| 3738689 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.55 | 32.0 | 3.85e-01 | 93.9% | 88.2% |
| 3690510 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.55 | 41.0 | 4.40e-01 | 97.0% | 92.7% |
| 5037301 | 2.1.1.111 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB | 0.55 | 37.0 | 4.28e-01 | 97.7% | 97.9% |
| 168731 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 36.0 | 4.10e-01 | 100.0% | 91.8% |
| 3819309 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.53 | 30.0 | 3.53e-01 | 89.4% | 82.4% |
| 3250605 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 42.0 | 4.34e-01 | 89.4% | 90.4% |
| 3462235 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.52 | 28.0 | 3.44e-01 | 93.9% | 83.7% |
| 3719807 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 43.0 | 4.24e-01 | 88.6% | 97.9% |
| 4137219 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.52 | 37.0 | 4.17e-01 | 96.2% | 98.0% |
| 5041730 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.52 | 37.0 | 3.57e-01 | 72.7% | 69.7% |
| 3943546 | 2.1.1.136 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3577 | 0.52 | 40.0 | 4.35e-01 | 96.2% | 98.2% |
| 3612689 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 41.0 | 4.43e-01 | 94.7% | 100.0% |
| 3716770 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.52 | 31.0 | 3.41e-01 | 94.7% | 73.3% |
| 4159356 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.51 | 37.0 | 2.70e-01 | 75.8% | 58.7% |
| 4946576 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.51 | 36.0 | 3.31e-01 | 72.7% | 59.2% |
| 5036880 | 330.1.1.35 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer | 0.50 | 27.0 | 3.47e-01 | 90.9% | 95.7% |
| 3707903 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.50 | 31.0 | 2.83e-01 | 93.9% | 43.3% |
| 3705431 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 41.0 | 4.33e-01 | 97.0% | 99.1% |
| 3271559 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.50 | 41.0 | 4.08e-01 | 87.1% | 98.5% |