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MH700630.1__AXP07700.1__SmphiM6_8__00008

Bact-Vir

MH700630.1__AXP07700.1__SmphiM6_8__00008

Identity

Accession:
MH700630 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_phiM6

TaxID: 2301527

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-97
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 46.0 4.80e-01 78.9% 75.0%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 50.0 4.31e-01 82.1% 84.4%
1wckA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.66 48.0 4.27e-01 76.8% 81.6%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.65 59.0 5.21e-01 100.0% 70.7%
1f6fB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 40.0 4.06e-01 93.7% 61.9%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.64 47.0 4.12e-01 77.9% 82.9%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 46.0 4.68e-01 75.8% 94.7%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.64 48.0 4.47e-01 78.9% 74.4%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.64 47.0 4.29e-01 77.9% 75.4%
7tg5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 50.0 4.81e-01 98.9% 74.8%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.63 42.0 3.62e-01 80.0% 41.9%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 44.0 4.63e-01 100.0% 83.3%
4ht1T00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.62 46.0 4.16e-01 78.9% 83.2%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.62 47.0 4.16e-01 81.1% 70.8%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 46.0 4.60e-01 85.3% 76.2%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 46.0 4.42e-01 100.0% 69.7%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 44.0 3.64e-01 94.7% 41.8%
3cihA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 42.0 3.58e-01 73.7% 58.2%
4e2gC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 42.0 3.90e-01 100.0% 56.3%
3eo6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 4.15e-01 98.9% 67.0%
3v6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 38.0 3.94e-01 92.6% 70.1%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 4.61e-01 95.8% 75.2%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 42.0 4.06e-01 97.9% 64.5%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 4.10e-01 97.9% 64.0%
3og6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 3.94e-01 94.7% 65.7%
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 46.0 4.49e-01 100.0% 76.5%
1o4tA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 45.0 4.23e-01 100.0% 67.0%
1yllC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 45.0 4.35e-01 100.0% 72.5%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 47.0 4.50e-01 100.0% 75.9%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 44.0 3.74e-01 98.9% 49.0%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 46.0 4.43e-01 100.0% 75.2%
2atfA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 3.88e-01 92.6% 66.1%
4nplA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.57 51.0 3.95e-01 100.0% 74.2%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 47.0 4.41e-01 91.6% 96.6%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 42.0 4.18e-01 98.9% 74.5%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.91e-01 100.0% 85.6%
2yd9A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.95e-01 100.0% 75.9%
2wnvD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 4.21e-01 92.6% 79.7%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 4.56e-01 94.7% 83.6%
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 4.21e-01 100.0% 69.7%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 46.0 3.64e-01 100.0% 44.0%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 3.61e-01 97.9% 45.7%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 48.0 4.68e-01 100.0% 92.5%
3v9fA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 48.0 4.48e-01 100.0% 83.5%
3s2cJ01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 47.0 4.19e-01 100.0% 95.0%
2xvlA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.07e-01 100.0% 91.8%
5cadA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 45.0 3.61e-01 98.9% 49.5%
3vi3B02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.52 37.0 3.30e-01 76.8% 54.9%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.91e-01 100.0% 77.4%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.86e-01 96.8% 65.7%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 45.0 3.92e-01 100.0% 65.7%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 45.0 3.78e-01 100.0% 61.1%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689525 10.12.1.129 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C, AraC_binding 0.68 49.0 5.02e-01 98.9% 77.8%
5042218 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 50.0 5.09e-01 77.9% 78.9%
5013355 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 45.0 4.80e-01 73.7% 78.8%
3182864 72.1.1.2 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like › Inhibitor_I36 0.66 52.0 5.51e-01 100.0% 97.6%
4969217 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 49.0 4.78e-01 78.9% 75.2%
5030047 10.12.1.98 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.66 46.0 4.45e-01 83.2% 64.8%
3250217 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.65 58.0 4.36e-01 100.0% 99.2%
3275901 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.65 48.0 4.54e-01 78.9% 81.7%
3511805 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.64 45.0 4.68e-01 98.9% 77.8%
3938640 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 46.0 4.41e-01 75.8% 76.4%
3624991 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 53.0 5.19e-01 95.8% 82.9%
5040998 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.63 45.0 4.64e-01 100.0% 78.9%
4954842 10.12.1.98 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.63 45.0 4.48e-01 97.9% 71.0%
3191666 10.12.1.46 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CENP-C_C 0.62 45.0 3.83e-01 97.9% 45.8%
3997705 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 51.0 5.01e-01 93.7% 82.9%
4650155 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.60 43.0 4.12e-01 75.8% 76.3%
5035836 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 47.0 4.28e-01 100.0% 60.7%
3428742 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.59 50.0 3.42e-01 93.7% 52.5%
3415539 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 50.0 4.81e-01 94.7% 82.7%
4944600 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 49.0 4.47e-01 94.7% 81.6%
5034388 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 49.0 4.96e-01 100.0% 98.9%
3749561 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.56 47.0 4.44e-01 91.6% 92.9%
3489664 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 45.0 4.19e-01 93.7% 69.2%
5039236 10.1.2.191 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM60 0.56 47.0 4.18e-01 93.7% 76.4%
3414663 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 47.0 4.36e-01 94.7% 78.4%
3500886 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 48.0 4.26e-01 94.7% 71.9%
3177537 10.12.1.129 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C, AraC_binding 0.55 47.0 4.78e-01 97.9% 95.8%
2605261 10.5.1.0 ↗ beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain 0.55 46.0 4.32e-01 92.6% 84.5%
3932159 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 46.0 4.36e-01 94.7% 78.3%
3543731 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.54 46.0 3.99e-01 95.8% 79.2%
3521963 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 47.0 4.48e-01 95.8% 84.5%
4216863 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.42e-01 95.8% 92.9%
3222920 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.53 42.0 3.78e-01 86.3% 64.7%
3540891 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.52 44.0 3.54e-01 94.7% 47.7%
3191672 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.52 45.0 4.20e-01 100.0% 76.9%
5008695 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.79e-01 84.2% 80.0%
3688941 11.1.1.643 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 0.50 38.0 3.86e-01 100.0% 82.1%