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MH700630.1__AXP07760.1__SmphiM6_69__00068

Bact-Vir

MH700630.1__AXP07760.1__SmphiM6_69__00068

Identity

Accession:
MH700630 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_phiM6

TaxID: 2301527

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-79
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.76 47.0 5.54e-01 84.6% 95.3%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.73 39.0 5.04e-01 73.8% 100.0%
3d00A02 3.30.60.80 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.70 30.0 4.20e-01 72.3% 86.7%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.66 47.0 5.05e-01 92.3% 89.1%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 38.0 3.57e-01 84.6% 45.7%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.64 46.0 4.25e-01 89.2% 60.5%
3mekA02 6.10.140.2220 Special › Helix non-globular › Helix Hairpins › 0.63 32.0 3.63e-01 70.8% 63.3%
2m6mA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 45.0 4.19e-01 87.7% 62.7%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.59 46.0 4.33e-01 89.2% 67.9%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 38.0 3.88e-01 81.5% 66.7%
4rslA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.11e-01 90.8% 71.2%
2pfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.54 46.0 3.09e-01 95.4% 57.4%
1flcB00 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.51 40.0 2.97e-01 89.2% 34.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026105 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 52.0 4.92e-01 93.8% 62.5%
3809619 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 39.0 4.22e-01 80.0% 63.6%
3688523 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 50.0 4.40e-01 93.8% 54.7%
3485806 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.66 48.0 4.48e-01 95.4% 60.0%
3933676 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.65 46.0 4.81e-01 81.5% 80.0%
3468663 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.65 44.0 5.11e-01 72.3% 100.0%
3889969 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 37.0 3.40e-01 78.5% 41.2%
4203118 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.64 53.0 4.72e-01 89.2% 64.4%
3191238 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.64 32.0 2.85e-01 83.1% 31.6%
3665313 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 46.0 4.63e-01 78.5% 81.5%
3725110 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.63 39.0 3.76e-01 80.0% 54.7%
3278207 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 41.0 3.03e-01 90.8% 28.1%
3456544 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.59 42.0 3.45e-01 75.4% 41.5%
3732556 376.1.1.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FANCL_C 0.58 47.0 4.37e-01 92.3% 69.4%
3634154 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 42.0 4.29e-01 89.2% 78.5%
4284004 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.55 43.0 3.13e-01 87.7% 40.5%
4128924 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.53 36.0 2.54e-01 87.7% 25.7%
3938245 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 43.0 3.12e-01 100.0% 52.8%
3467699 376.1.3.56 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PF30811 0.51 36.0 3.18e-01 76.9% 58.3%