←Back to structures
MH700630.1__AXP07761.1__SmphiM6_70__00069
Bact-VirMH700630.1__AXP07761.1__SmphiM6_70__00069
Identity
- Accession:
- MH700630 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 28-60_91-148
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vkbA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.86 | 83.0 | 6.83e-01 | 100.0% | 76.9% |
| 2qikA01 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.82 | 77.0 | 7.15e-01 | 97.8% | 85.5% |
| 2i5tA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.81 | 76.0 | 6.00e-01 | 100.0% | 66.3% |
| 1v30A00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.77 | 72.0 | 6.45e-01 | 97.8% | 76.3% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 45.0 | 4.33e-01 | 79.1% | 77.4% |
| 3lnlB02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.52e-01 | 97.8% | 90.9% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 43.0 | 4.36e-01 | 90.1% | 98.9% |
| 2cq4A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 39.0 | 3.92e-01 | 79.1% | 86.6% |
| 5fiiB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 41.0 | 4.29e-01 | 96.7% | 97.4% |
| 2go9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 39.0 | 4.22e-01 | 97.8% | 97.4% |
| 7csxA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 38.0 | 4.13e-01 | 97.8% | 100.0% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.52 | 36.0 | 3.52e-01 | 74.7% | 98.1% |
| 2dgwA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 41.0 | 4.29e-01 | 96.7% | 98.8% |
| 3vtiA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.80e-01 | 80.2% | 81.2% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3551394 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.89 | 84.0 | 6.82e-01 | 97.8% | 77.8% |
| 3895480 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.89 | 85.0 | 7.06e-01 | 100.0% | 79.3% |
| 3795719 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.89 | 74.0 | 6.01e-01 | 86.8% | 65.8% |
| 4997425 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.87 | 81.0 | 6.79e-01 | 96.7% | 84.3% |
| 3927947 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.87 | 83.0 | 6.91e-01 | 100.0% | 75.9% |
| 4021972 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.85 | 78.0 | 6.18e-01 | 96.7% | 64.7% |
| 5009354 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.85 | 78.0 | 6.87e-01 | 95.6% | 81.6% |
| 4224543 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.85 | 82.0 | 7.17e-01 | 100.0% | 84.0% |
| 4020115 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.85 | 79.0 | 6.24e-01 | 100.0% | 73.1% |
| 5049926 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.85 | 80.0 | 7.29e-01 | 97.8% | 88.5% |
| 4551911 | 810.1.1.9 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › PF28338 | 0.84 | 77.0 | 5.51e-01 | 98.9% | 52.2% |
| 4445285 | 810.1.1.9 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › PF28338 | 0.83 | 78.0 | 5.49e-01 | 100.0% | 52.4% |
| 3631474 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.83 | 76.0 | 5.57e-01 | 97.8% | 65.9% |
| 3471830 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.82 | 76.0 | 5.83e-01 | 97.8% | 58.5% |
| 3278316 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.81 | 75.0 | 6.13e-01 | 97.8% | 69.7% |
| 4934164 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.81 | 76.0 | 6.35e-01 | 98.9% | 72.4% |
| 3193618 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.80 | 74.0 | 5.95e-01 | 97.8% | 73.0% |
| 5079168 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.80 | 76.0 | 6.35e-01 | 100.0% | 72.4% |
| 3959699 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.80 | 74.0 | 6.11e-01 | 97.8% | 73.3% |
| 3955760 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.80 | 74.0 | 6.13e-01 | 96.7% | 66.9% |
| 3198306 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.79 | 74.0 | 5.96e-01 | 100.0% | 73.9% |
| 4973218 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.79 | 73.0 | 6.70e-01 | 97.8% | 92.2% |
| 3602319 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.79 | 74.0 | 7.05e-01 | 100.0% | 98.1% |
| 5009355 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.78 | 74.0 | 6.34e-01 | 100.0% | 78.5% |
| 3632224 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.78 | 73.0 | 6.67e-01 | 100.0% | 87.8% |
| 3207761 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.78 | 72.0 | 6.44e-01 | 97.8% | 85.0% |
| 5572 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.77 | 72.0 | 6.45e-01 | 97.8% | 76.3% |
| 3630947 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.76 | 69.0 | 6.49e-01 | 97.8% | 94.4% |
| 3782177 | 810.1.1.1 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC | 0.75 | 69.0 | 5.34e-01 | 97.8% | 67.6% |
| 3254582 | 810.1.1.1 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC | 0.71 | 67.0 | 5.11e-01 | 100.0% | 63.7% |
| 5056705 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.57 | 46.0 | 4.84e-01 | 100.0% | 97.5% |
| 3399570 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 47.0 | 4.37e-01 | 92.3% | 92.5% |
| 4026759 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.57 | 46.0 | 4.47e-01 | 91.2% | 90.5% |
| 3710149 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 44.0 | 4.07e-01 | 85.7% | 79.2% |
| 3996296 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 41.0 | 3.83e-01 | 79.1% | 73.9% |
| 3619480 | 304.9.1.77 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28441 | 0.54 | 45.0 | 4.18e-01 | 95.6% | 82.5% |
| 3260790 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 43.0 | 3.80e-01 | 90.1% | 71.4% |
| 4937870 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.53 | 48.0 | 4.81e-01 | 100.0% | 97.9% |
| 3894990 | 304.9.1.77 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28441 | 0.53 | 41.0 | 3.78e-01 | 85.7% | 71.2% |
| 3827225 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 42.0 | 4.11e-01 | 87.9% | 94.0% |
| 3609138 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 44.0 | 4.21e-01 | 94.5% | 79.1% |
| 5030373 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.53 | 46.0 | 4.58e-01 | 98.9% | 93.7% |
| 4934810 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 41.0 | 4.29e-01 | 98.9% | 96.2% |
| 5035757 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.53 | 47.0 | 4.52e-01 | 100.0% | 88.6% |
| 5080834 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.52 | 46.0 | 4.47e-01 | 98.9% | 93.3% |
| 3495445 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 44.0 | 3.00e-01 | 97.8% | 25.7% |
| 4309637 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.52 | 42.0 | 4.38e-01 | 96.7% | 96.4% |
| 5025078 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.52 | 45.0 | 4.37e-01 | 98.9% | 93.3% |
| 5079022 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.51 | 45.0 | 4.25e-01 | 98.9% | 89.1% |
| 5072501 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.51 | 45.0 | 4.36e-01 | 98.9% | 97.0% |
| 4015795 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 40.0 | 4.19e-01 | 93.4% | 100.0% |
| 3769353 | 304.9.1.83 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, RBM39linker | 0.51 | 40.0 | 3.07e-01 | 89.0% | 42.6% |
| 4938780 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.51 | 45.0 | 4.51e-01 | 100.0% | 95.8% |
| 3998177 | 304.9.1.77 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28441 | 0.50 | 42.0 | 4.06e-01 | 94.5% | 86.7% |
| 3660815 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.50 | 42.0 | 3.93e-01 | 95.6% | 74.2% |
| 3173413 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 40.0 | 4.14e-01 | 95.6% | 95.3% |
| 4935680 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.50 | 44.0 | 4.16e-01 | 98.9% | 90.9% |
| 3756183 | 304.9.1.77 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28441 | 0.50 | 41.0 | 3.16e-01 | 93.4% | 38.3% |
D2
medium
residues 61-90_149-183