←Back to structures

MH700630.1__AXP07764.1__SmphiM6_73__00072

Bact-Vir

MH700630.1__AXP07764.1__SmphiM6_73__00072

Identity

Accession:
MH700630 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_phiM6

TaxID: 2301527

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 287-340
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l22A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.72 52.0 3.06e-01 77.8% 19.8%
3rfwA01 1.10.8.1040 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 52.0 5.07e-01 83.3% 73.8%
3ragB00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.66 50.0 3.33e-01 83.3% 20.4%
4f03B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 37.0 2.76e-01 81.5% 22.1%
4jneA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.62 45.0 3.94e-01 81.5% 51.1%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 48.0 3.79e-01 92.6% 71.3%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.58 44.0 3.84e-01 83.3% 92.9%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.58 39.0 4.11e-01 74.1% 76.0%
2nx2A00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 49.0 3.50e-01 100.0% 79.8%
1peqA03 1.10.1650.20 Mainly Alpha › Orthogonal Bundle › 50s Ribosomal Protein L19e, Chain O, domain 1 › 0.56 40.0 4.05e-01 98.1% 79.2%
2wyhB01 3.40.50.11160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 47.0 3.98e-01 100.0% 91.7%
1f14A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 3.18e-01 100.0% 82.1%
3ibtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 3.13e-01 98.1% 90.2%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 37.0 2.91e-01 74.1% 51.2%
7kseA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 3.09e-01 83.3% 98.6%
7va8A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 43.0 2.88e-01 100.0% 78.2%
2j0aA00 3.90.550.50 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.51 42.0 2.82e-01 98.1% 28.8%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.63e-01 79.6% 84.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963772 107.1.1.13 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › NorB_cytochrome_c-like 0.82 67.0 4.35e-01 87.0% 61.0%
4172193 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.78 54.0 3.88e-01 72.2% 26.9%
3990113 7512.1.1.2 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Phosphorylase 0.77 56.0 3.30e-01 77.8% 20.7%
3953673 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.75 60.0 3.52e-01 90.7% 21.8%
3965856 107.1.1.13 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › NorB_cytochrome_c-like 0.73 64.0 4.19e-01 96.3% 63.6%
4978391 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.73 59.0 4.85e-01 90.7% 71.0%
3503192 7512.1.1.2 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Phosphorylase 0.73 62.0 3.61e-01 94.4% 19.3%
3940154 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.68 58.0 3.53e-01 100.0% 49.9%
1395085 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.66 51.0 3.36e-01 83.3% 19.4%
4359110 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.65 53.0 3.07e-01 100.0% 37.8%
3710673 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.61 50.0 3.33e-01 100.0% 30.4%
3600710 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 49.0 3.30e-01 100.0% 79.2%
3184194 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.58 43.0 2.96e-01 79.6% 86.8%
5000049 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.57 49.0 3.34e-01 100.0% 42.4%
3385134 109.4.1.3008 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPAP1_C, TPR_RPAP1 0.57 43.0 2.41e-01 83.3% 14.0%
3486403 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 45.0 2.83e-01 96.3% 80.3%
3575820 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.53 43.0 3.15e-01 94.4% 71.2%
4382577 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 45.0 2.86e-01 100.0% 29.8%
3164366 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 43.0 2.90e-01 100.0% 61.6%
3999035 7516.1.1.8 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T 0.52 42.0 2.85e-01 100.0% 47.1%
3386014 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.51 41.0 2.70e-01 100.0% 32.3%
D2 medium residues 1-223
PDB
Domain cluster: rep: OP830906.1__WBF78058.1__MEP401_gp05__00005__D296-546
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12224.14 best Amidoligase_2 32.7 9.80e-08 88.3% 58.8%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r8gA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.75 68.0 5.73e-01 95.1% 71.0%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 21.0 3.87e-01 75.8% 100.0%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.65 24.0 3.56e-01 79.8% 72.4%
1mzpA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.63 31.0 4.07e-01 87.9% 81.7%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 23.0 3.99e-01 78.0% 100.0%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 26.0 4.07e-01 75.3% 100.0%
1ad2A01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.62 29.0 3.82e-01 80.3% 79.3%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.61 26.0 3.99e-01 85.7% 100.0%
1c16A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 26.0 3.83e-01 98.7% 91.8%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.59 28.0 4.08e-01 84.3% 100.0%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 27.0 3.79e-01 96.9% 90.2%
1xauA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 27.0 3.72e-01 97.3% 88.5%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 25.0 3.89e-01 86.5% 100.0%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 25.0 3.75e-01 86.5% 94.6%
4hjhA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 28.0 4.00e-01 74.4% 100.0%
1jmxA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 20.0 3.27e-01 83.4% 84.8%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 22.0 3.18e-01 73.5% 75.8%
2ednA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 27.0 3.58e-01 90.6% 81.4%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 23.0 3.43e-01 87.9% 85.9%
3ufiA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 27.0 3.51e-01 86.5% 78.4%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 27.0 3.97e-01 74.0% 99.0%
5ixuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 27.0 3.89e-01 74.0% 100.0%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 27.0 3.78e-01 77.1% 92.1%
1ix2A00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 22.0 3.05e-01 80.3% 72.5%
1hcfX00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 24.0 3.43e-01 97.3% 86.1%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 25.0 3.72e-01 80.3% 100.0%
6fh1B01 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.55 47.0 4.68e-01 91.5% 99.6%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 22.0 3.37e-01 88.3% 90.1%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 27.0 3.47e-01 99.1% 83.6%
1vqyB01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 25.0 3.65e-01 73.5% 100.0%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 26.0 3.62e-01 88.3% 92.8%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 31.0 3.76e-01 96.4% 91.0%
5u8rA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 23.0 3.08e-01 87.9% 76.9%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 25.0 3.46e-01 89.2% 90.2%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 19.0 2.77e-01 78.9% 72.0%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 24.0 3.26e-01 97.3% 88.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4014247 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.83 72.0 5.96e-01 90.1% 83.5%
3191600 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.83 64.0 6.18e-01 78.9% 82.4%
3192908 321.1.1.10 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.82 72.0 6.03e-01 90.1% 85.2%
4014087 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.78 73.0 6.25e-01 97.3% 81.4%
3723519 321.1.1.10 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.77 74.0 6.08e-01 99.6% 86.5%
3735130 321.1.1.10 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.77 73.0 5.67e-01 99.6% 85.8%
3194430 321.1.1.10 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.76 71.0 5.96e-01 97.3% 87.0%
4328245 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.64 32.0 4.06e-01 83.4% 80.0%
5027544 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.63 24.0 3.70e-01 87.9% 85.9%
3296813 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.63 30.0 3.74e-01 79.8% 70.7%
3908315 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.62 31.0 3.92e-01 87.0% 79.2%
3423206 304.59.1.0 ↗ a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like 0.61 27.0 4.11e-01 74.9% 100.0%
4028983 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.61 31.0 3.89e-01 83.4% 78.8%
5036818 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.61 29.0 3.82e-01 89.2% 80.0%
3655848 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 27.0 3.98e-01 75.8% 98.9%
4939771 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.59 29.0 3.71e-01 90.6% 80.6%
3715301 304.55.2.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.59 37.0 4.52e-01 80.7% 98.6%
4110651 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 33.0 3.87e-01 88.3% 76.2%
3825148 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.58 30.0 3.72e-01 89.7% 77.9%
3611768 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 27.0 3.52e-01 79.8% 76.0%
4385554 11.1.5.28 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF1775 0.57 27.0 3.46e-01 79.8% 75.4%
3919041 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.57 23.0 3.07e-01 87.0% 66.7%
3779515 11.1.5.27 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.56 26.0 3.04e-01 80.3% 58.1%
2879522 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 25.0 3.69e-01 81.6% 97.8%
3471298 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.55 27.0 3.66e-01 98.7% 90.4%
6301 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 28.0 3.79e-01 91.5% 96.4%
3961836 11.1.1.214 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.54 22.0 3.20e-01 82.5% 81.0%
4644497 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.54 20.0 3.29e-01 80.7% 93.7%
1270271 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 25.0 3.60e-01 70.4% 100.0%
4831470 304.107.1.0 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.53 31.0 3.07e-01 80.7% 51.0%
3851190 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.53 24.0 3.32e-01 86.1% 85.7%
4998046 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 29.0 3.57e-01 98.7% 85.2%
4976546 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 26.0 3.64e-01 95.5% 100.0%
5014046 11.1.1.949 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28476 0.51 22.0 3.06e-01 79.4% 80.0%
D3 medium residues 224-284
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 43.0 4.33e-01 86.9% 77.8%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.55 40.0 2.79e-01 88.5% 22.9%
3m4xA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 47.0 3.06e-01 100.0% 90.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3796175 192.15.1.99 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF31025 0.52 38.0 4.05e-01 95.1% 94.3%