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MH700630.1__AXP07778.1__SmphiM6_87__00086

Bact-Vir

MH700630.1__AXP07778.1__SmphiM6_87__00086

Identity

Accession:
MH700630 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_phiM6

TaxID: 2301527

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-74
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 63.0 5.52e-01 100.0% 61.3%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 61.0 5.43e-01 100.0% 63.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 61.0 6.23e-01 100.0% 92.2%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 58.0 5.29e-01 100.0% 65.9%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 6.27e-01 100.0% 91.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.66e-01 100.0% 79.2%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.81e-01 100.0% 90.2%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.80e-01 100.0% 90.3%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 44.0 4.77e-01 72.7% 75.0%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 59.0 6.03e-01 100.0% 93.8%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 58.0 5.96e-01 100.0% 92.2%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 63.0 5.39e-01 100.0% 62.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.69 55.0 5.62e-01 100.0% 88.9%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 57.0 5.48e-01 100.0% 77.6%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 44.0 4.26e-01 78.8% 58.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 4.89e-01 97.0% 100.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.11e-01 100.0% 80.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.93e-01 100.0% 83.9%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 57.0 4.36e-01 100.0% 50.0%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.62 48.0 3.63e-01 98.5% 33.7%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 56.0 5.25e-01 100.0% 84.8%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 42.0 4.45e-01 95.5% 87.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.52e-01 100.0% 85.7%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 44.0 3.79e-01 100.0% 50.0%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 44.0 3.26e-01 100.0% 29.3%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 40.0 4.37e-01 93.9% 94.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 41.0 4.14e-01 97.0% 78.1%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 4.37e-01 90.9% 80.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 4.37e-01 90.9% 93.7%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.55 40.0 3.40e-01 77.3% 91.0%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 41.0 4.30e-01 97.0% 91.5%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.90e-01 100.0% 74.3%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 39.0 2.96e-01 81.8% 47.2%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.53 37.0 3.37e-01 80.3% 52.6%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.47e-01 95.5% 84.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 66.0 6.71e-01 100.0% 80.0%
4966131 4.1.3.1 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP 0.80 62.0 5.19e-01 100.0% 50.0%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 70.0 6.86e-01 100.0% 90.0%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 64.0 5.50e-01 100.0% 58.0%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 61.0 6.61e-01 100.0% 100.0%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 63.0 6.57e-01 100.0% 96.7%
3524378 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 61.0 6.39e-01 100.0% 93.3%
3520216 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 65.0 6.44e-01 100.0% 88.4%
4003181 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 64.0 6.67e-01 100.0% 98.3%
3914833 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 60.0 5.90e-01 100.0% 80.0%
3231675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 59.0 5.85e-01 100.0% 80.0%
3525376 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 59.0 5.97e-01 100.0% 86.2%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 6.40e-01 100.0% 87.8%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 56.0 5.64e-01 100.0% 81.5%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 56.0 5.71e-01 98.5% 84.4%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 60.0 6.05e-01 100.0% 89.2%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 66.0 6.17e-01 100.0% 92.5%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 59.0 5.29e-01 100.0% 64.4%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 53.0 5.42e-01 100.0% 80.0%
3868602 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 64.0 5.52e-01 100.0% 65.0%
4093354 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 62.0 6.08e-01 100.0% 88.6%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 63.0 5.72e-01 100.0% 75.3%
3482677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.66e-01 100.0% 82.9%
4961854 4.1.1.492 ↗ beta barrels › SH3 › SH3 › SH3 › PF26460 0.70 64.0 6.12e-01 100.0% 86.7%
3399675 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.69 45.0 4.58e-01 74.2% 67.7%
None — 0.69 63.0 4.07e-01 100.0% 23.4%
3786978 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 63.0 6.27e-01 100.0% 95.7%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 51.0 5.18e-01 100.0% 80.0%
4014568 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.69 48.0 5.15e-01 90.9% 87.3%
3538030 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 57.0 5.65e-01 100.0% 85.7%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 58.0 4.46e-01 100.0% 42.1%
3484620 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 61.0 5.38e-01 100.0% 77.9%
3879216 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.90e-01 98.5% 89.3%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 50.0 5.07e-01 100.0% 80.0%
3639839 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.68 45.0 4.94e-01 92.4% 86.8%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 61.0 5.89e-01 100.0% 88.0%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.76e-01 100.0% 90.0%
3937006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 61.0 5.78e-01 100.0% 87.2%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.67 59.0 4.98e-01 100.0% 93.8%
3911248 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 60.0 5.43e-01 100.0% 90.0%
3999482 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.67 59.0 5.01e-01 100.0% 78.2%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 49.0 4.96e-01 100.0% 80.0%
4398865 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 60.0 5.24e-01 100.0% 84.2%
3687023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.03e-01 100.0% 81.0%
4030398 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 55.0 5.56e-01 100.0% 92.3%
3242138 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.64 46.0 4.77e-01 80.3% 83.3%
3887433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 58.0 4.75e-01 100.0% 97.4%
3697067 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 45.0 4.22e-01 92.4% 60.0%
3482288 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 57.0 5.33e-01 100.0% 82.3%
3196131 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.62 56.0 4.95e-01 100.0% 78.9%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 5.00e-01 100.0% 80.0%
4932581 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.61 42.0 4.30e-01 72.7% 83.1%
3866907 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 52.0 4.88e-01 100.0% 78.8%
5037223 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.59 41.0 4.27e-01 71.2% 85.0%
4243071 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.59 41.0 4.41e-01 97.0% 89.1%
3744711 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.58 45.0 3.39e-01 100.0% 32.9%
1108449 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.58 44.0 3.26e-01 100.0% 29.3%