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MH700630.1__AXP07799.1__SmphiM6_108__00107

Bact-Vir

MH700630.1__AXP07799.1__SmphiM6_108__00107

Identity

Accession:
MH700630 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-73
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.71 60.0 4.80e-01 94.4% 50.9%
4gvbA00 3.30.70.440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit 0.66 55.0 4.99e-01 100.0% 93.5%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.63 51.0 3.56e-01 96.3% 88.8%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.62 50.0 4.84e-01 94.4% 81.0%
8gk4C02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.62 48.0 4.17e-01 90.7% 100.0%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 4.49e-01 94.4% 91.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 50.0 3.57e-01 92.6% 47.9%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 42.0 4.20e-01 92.6% 69.5%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.61 49.0 3.48e-01 96.3% 73.6%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 48.0 3.97e-01 94.4% 55.0%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 4.16e-01 94.4% 88.8%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 49.0 4.10e-01 96.3% 58.2%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 45.0 3.63e-01 92.6% 41.8%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 46.0 3.45e-01 94.4% 32.9%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.58 41.0 2.87e-01 75.9% 63.7%
3ni2A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.57 38.0 2.30e-01 70.4% 26.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 45.0 4.22e-01 100.0% 68.4%
4j7rB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 39.0 3.08e-01 72.2% 72.1%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 46.0 3.68e-01 94.4% 53.8%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 46.0 3.81e-01 96.3% 48.6%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.56 44.0 3.91e-01 90.7% 94.0%
1wfuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.63e-01 98.1% 49.5%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.56 42.0 4.01e-01 92.6% 69.7%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 42.0 3.50e-01 94.4% 52.8%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 44.0 3.52e-01 94.4% 92.7%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 43.0 3.91e-01 94.4% 92.9%
1eajB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.52e-01 94.4% 59.2%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 3.14e-01 92.6% 35.9%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 40.0 3.22e-01 87.0% 68.5%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.54 40.0 3.56e-01 90.7% 64.9%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 43.0 3.48e-01 92.6% 43.1%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 41.0 3.35e-01 88.9% 84.7%
6ea2A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.54 39.0 3.43e-01 94.4% 47.9%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 41.0 3.34e-01 88.9% 72.3%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 42.0 3.64e-01 92.6% 86.0%
4eiuA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.53 40.0 3.42e-01 100.0% 46.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 48.0 3.98e-01 100.0% 89.1%
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.45e-01 96.3% 49.5%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 44.0 3.02e-01 100.0% 42.0%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 45.0 3.73e-01 100.0% 72.3%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 41.0 3.72e-01 96.3% 97.6%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.56e-01 94.4% 60.4%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 39.0 3.24e-01 85.2% 88.8%
3webA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.22e-01 94.4% 49.2%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 41.0 3.36e-01 98.1% 80.3%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 2.99e-01 92.6% 55.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4289160 3397.1.1.1 a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22 0.74 64.0 5.48e-01 94.4% 62.4%
4169399 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.69 56.0 4.90e-01 88.9% 100.0%
3595127 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.68 56.0 5.13e-01 90.7% 98.6%
3338688 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 53.0 5.08e-01 94.4% 92.3%
3285321 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.64 50.0 4.00e-01 90.7% 97.5%
5075567 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.63 50.0 4.06e-01 90.7% 97.3%
3666791 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 48.0 4.94e-01 90.7% 96.0%
199962 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.62 50.0 4.84e-01 94.4% 81.0%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 46.0 4.68e-01 98.1% 92.0%
4999156 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 51.0 4.03e-01 92.6% 97.4%
5041306 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 49.0 4.37e-01 90.7% 100.0%
3781272 10.32.1.204 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Rax2_2 0.61 43.0 2.94e-01 75.9% 97.0%
4373134 304.160.1.1 a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › GvpL_GvpF 0.60 49.0 4.15e-01 94.4% 87.4%
3472961 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 46.0 3.42e-01 87.0% 71.3%
3963369 4222.1.1.2 a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.59 46.0 4.00e-01 92.6% 54.7%
3467156 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 49.0 4.03e-01 100.0% 72.7%
3842874 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.58 44.0 3.68e-01 94.4% 44.8%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 46.0 4.59e-01 100.0% 92.7%
5047755 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.58 47.0 3.63e-01 98.1% 40.0%
3184485 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.58 46.0 3.87e-01 98.1% 50.9%
3416094 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.57 47.0 3.20e-01 94.4% 24.1%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 45.0 4.45e-01 98.1% 88.1%
3668699 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.57 45.0 4.15e-01 98.1% 66.3%
5052992 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.56 41.0 2.79e-01 98.1% 19.5%
4943472 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.56 42.0 3.52e-01 87.0% 71.4%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 43.0 4.12e-01 98.1% 74.3%
3441214 376.1.1.14 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › UPF1_Zn_bind 0.55 39.0 3.36e-01 100.0% 42.9%
3576143 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.55 45.0 3.69e-01 98.1% 67.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 42.0 3.99e-01 98.1% 69.3%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 43.0 3.91e-01 98.1% 62.4%
5061487 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 36.0 2.83e-01 72.2% 90.6%
3620456 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.54 43.0 3.54e-01 94.4% 92.7%
4331814 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.54 42.0 3.48e-01 96.3% 45.2%
3667014 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 40.0 2.40e-01 87.0% 17.1%
4996589 3662.1.1.4 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac 0.53 40.0 3.25e-01 87.0% 73.3%
1584871 11.1.1.155 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3458 0.53 39.0 3.42e-01 94.4% 48.4%
3551719 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.53 42.0 3.99e-01 100.0% 76.0%
3905094 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.53 42.0 3.33e-01 96.3% 45.9%
4155354 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.53 42.0 3.45e-01 96.3% 44.2%
3622256 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 42.0 3.17e-01 92.6% 79.4%
4026146 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 42.0 3.79e-01 88.9% 100.0%
3312666 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 42.0 3.89e-01 92.6% 70.0%
3406765 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 41.0 3.56e-01 90.7% 74.7%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.52 42.0 3.58e-01 100.0% 51.4%
3710611 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.52 43.0 2.81e-01 96.3% 62.6%
3339376 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 41.0 3.29e-01 92.6% 42.6%
4946992 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.52 44.0 3.20e-01 100.0% 34.1%
3785040 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.52 40.0 2.63e-01 87.0% 56.9%
3453007 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 40.0 3.46e-01 94.4% 82.0%
3508967 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 40.0 3.37e-01 94.4% 47.3%
3599190 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.86e-01 94.4% 49.5%
3268521 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 43.0 3.20e-01 100.0% 56.1%