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MH706966.1__AXN54201.1__mEp021_82__00082

Bact-Vir

MH706966.1__AXN54201.1__mEp021_82__00082

Identity

Accession:
MH706966 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterobacteria_phage_mEp021

TaxID: 1150757

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
Domain cluster: rep: OM868082.1__UPT53432.1__X__00062__D7-97
D2 high residues 235-324
PDB
Domain cluster: rep: OL631484.1__WCD43993.1__ECML606-1_000042__00042__D786-852
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.71 57.0 4.16e-01 84.4% 40.4%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 49.0 4.24e-01 91.1% 50.0%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.66 56.0 4.11e-01 93.3% 90.8%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 52.0 3.97e-01 84.4% 49.0%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 56.0 4.76e-01 94.4% 66.7%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.65 53.0 3.98e-01 86.7% 39.5%
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.64 55.0 4.27e-01 97.8% 62.0%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.63 49.0 3.90e-01 84.4% 85.3%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 3.96e-01 73.3% 95.4%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 45.0 3.53e-01 77.8% 84.0%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.65e-01 73.3% 98.0%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.52e-01 87.8% 74.9%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 45.0 3.89e-01 84.4% 94.6%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.58 50.0 4.15e-01 96.7% 59.6%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 49.0 3.98e-01 95.6% 59.9%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 49.0 3.41e-01 100.0% 36.6%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 4.22e-01 80.0% 87.2%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 46.0 3.18e-01 91.1% 61.3%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.56 44.0 3.88e-01 85.6% 93.4%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 38.0 3.78e-01 70.0% 74.0%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.19e-01 72.2% 40.0%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 28.0 3.47e-01 70.0% 78.9%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.26e-01 100.0% 40.6%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.32e-01 100.0% 42.6%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 3.51e-01 97.8% 73.1%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.12e-01 92.2% 39.1%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.53 45.0 4.01e-01 95.6% 85.4%
2nvwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 3.38e-01 92.2% 51.0%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.35e-01 87.8% 62.3%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 44.0 3.20e-01 100.0% 47.3%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.51 44.0 3.99e-01 100.0% 93.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615537 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.74 54.0 4.61e-01 77.8% 89.7%
4447649 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.72 56.0 4.11e-01 82.2% 40.4%
166902 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.71 57.0 4.16e-01 84.4% 40.4%
3943894 77.1.1.7 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.69 58.0 5.17e-01 90.0% 81.6%
4008120 5.1.5.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.69 58.0 5.23e-01 90.0% 85.0%
3387532 3523.1.1.1 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.68 51.0 5.01e-01 81.1% 88.0%
3572103 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.66 48.0 4.24e-01 84.4% 51.1%
3235057 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.65 47.0 3.20e-01 75.6% 79.7%
3594404 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.64 58.0 4.05e-01 97.8% 35.6%
346609 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.63 55.0 4.24e-01 97.8% 62.0%
4285166 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.59 47.0 3.74e-01 87.8% 89.1%
4250791 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.59 48.0 3.75e-01 87.8% 82.1%
3627380 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.60e-01 100.0% 44.0%
876 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.58 50.0 4.12e-01 96.7% 58.2%
3424129 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 3.05e-01 91.1% 44.8%
5039064 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.31e-01 100.0% 35.8%
3173480 3755.4.1.28 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Kre28 0.56 39.0 3.96e-01 73.3% 75.6%
3905773 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.56 45.0 3.62e-01 88.9% 71.7%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.55 32.0 3.57e-01 80.0% 72.9%
4440158 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.55 48.0 3.32e-01 100.0% 36.5%
3455400 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.55 48.0 3.35e-01 100.0% 38.1%
3962855 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 38.0 3.54e-01 78.9% 59.3%
3188402 4099.1.1.31 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF26204 0.53 42.0 3.36e-01 90.0% 66.5%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.53 31.0 3.55e-01 80.0% 85.0%
1144736 12.2.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Glyco_hydro_98C 0.52 44.0 3.66e-01 95.6% 100.0%
3721529 298.1.1.22 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Gal80p_C-like 0.51 42.0 3.72e-01 92.2% 95.7%
3916526 719.1.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.51 41.0 3.63e-01 86.7% 95.4%
D3 high residues 334-448
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 34.7 2.40e-08 46.1% 93.1%