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MH707434.1__AYJ75576.1__BSP19_014__00014

Bact-Vir

MH707434.1__AYJ75576.1__BSP19_014__00014

Identity

Accession:
MH707434 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_BSP19

TaxID: 2301656

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-80
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 45.0 3.19e-01 73.0% 30.2%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.64 44.0 3.33e-01 73.0% 41.7%
1vq8N00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.63 43.0 3.09e-01 71.4% 61.3%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 43.0 3.53e-01 71.4% 64.0%
2ivnA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 42.0 3.18e-01 71.4% 63.7%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.62 43.0 2.82e-01 74.6% 37.7%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 49.0 3.17e-01 88.9% 37.1%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 41.0 2.93e-01 71.4% 38.6%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.58 41.0 3.40e-01 76.2% 41.3%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.58e-01 100.0% 69.8%
2e87A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 39.0 2.77e-01 74.6% 29.7%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 40.0 3.13e-01 79.4% 35.8%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 42.0 3.20e-01 84.1% 51.0%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.55e-01 84.1% 85.2%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.09e-01 95.2% 98.9%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.15e-01 77.8% 80.6%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.84e-01 76.2% 79.4%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.54 42.0 3.77e-01 90.5% 58.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 39.0 3.49e-01 77.8% 84.6%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 39.0 3.75e-01 79.4% 71.1%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.53 44.0 3.39e-01 100.0% 69.2%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.50e-01 92.1% 96.0%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 39.0 3.35e-01 81.0% 49.1%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.53 39.0 3.08e-01 82.5% 42.2%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 39.0 3.10e-01 84.1% 44.1%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 35.0 3.08e-01 71.4% 67.9%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 37.0 2.41e-01 76.2% 24.3%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.52 44.0 3.69e-01 100.0% 98.3%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.52 45.0 3.43e-01 100.0% 91.6%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.48e-01 95.2% 73.4%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 46.0 3.00e-01 100.0% 77.6%
2r11D00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.82e-01 95.2% 66.0%
1sqiA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 2.82e-01 81.0% 29.9%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.38e-01 82.5% 56.7%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.51 40.0 3.47e-01 88.9% 97.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.61e-01 79.4% 70.4%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.77e-01 92.1% 74.3%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.42e-01 95.2% 74.4%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.50 39.0 3.34e-01 88.9% 54.5%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.50 39.0 3.35e-01 90.5% 52.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3496857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 3.78e-01 73.0% 64.8%
1421001 2484.1.1.75 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e 0.64 45.0 3.06e-01 74.6% 60.3%
1438142 2484.1.1.69 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18_c,Ribosomal_L5e 0.63 43.0 3.57e-01 71.4% 48.7%
5008603 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.63 44.0 3.20e-01 74.6% 28.9%
3927689 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.62 44.0 3.67e-01 84.1% 43.8%
4546371 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.61 48.0 3.90e-01 85.7% 90.0%
3374952 375.4.1.5 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C 0.61 43.0 4.01e-01 79.4% 57.6%
3967506 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.60 43.0 2.97e-01 77.8% 70.8%
4969245 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 41.0 3.18e-01 73.0% 58.1%
3965259 243.3.1.16 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 0.59 43.0 4.18e-01 81.0% 70.3%
5036656 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.48e-01 87.3% 86.7%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.57 32.0 3.40e-01 71.4% 61.8%
3443786 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 44.0 4.22e-01 92.1% 73.3%
3587082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 40.0 4.24e-01 77.8% 96.3%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 36.0 3.65e-01 73.0% 66.2%
3882464 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 45.0 4.35e-01 96.8% 85.3%
5018913 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 37.0 3.12e-01 71.4% 37.5%
5001270 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 38.0 3.56e-01 77.8% 58.7%
3426692 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 38.0 3.64e-01 74.6% 70.7%
3420092 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 39.0 3.69e-01 84.1% 62.5%
3809302 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 39.0 3.61e-01 87.3% 58.8%
3903950 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.53 40.0 3.42e-01 79.4% 49.5%
4937869 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.53 40.0 3.66e-01 82.5% 63.5%
3964389 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 41.0 3.61e-01 84.1% 92.6%
4159891 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.53 44.0 2.85e-01 100.0% 25.0%
3994973 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.53 43.0 3.40e-01 88.9% 99.2%
5049973 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 36.0 2.86e-01 71.4% 67.9%
1905698 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.53 40.0 3.27e-01 82.5% 73.4%
3964101 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 37.0 3.78e-01 76.2% 81.7%
3435911 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 39.0 3.31e-01 82.5% 45.5%
3492441 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 41.0 3.92e-01 93.7% 73.3%
3727458 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 41.0 3.80e-01 90.5% 67.1%
5019052 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.53 42.0 3.65e-01 93.7% 91.7%
4243492 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.52 36.0 3.73e-01 77.8% 83.3%
5049111 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 35.0 2.97e-01 73.0% 86.4%
4966333 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 39.0 3.92e-01 95.2% 80.0%
4336488 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 37.0 3.68e-01 82.5% 71.4%
3802643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.37e-01 82.5% 52.6%
3619345 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.52 45.0 3.30e-01 100.0% 86.5%
3592192 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.52 41.0 3.27e-01 93.7% 69.0%
326716 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.51 43.0 2.82e-01 95.2% 66.0%
3550970 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.51 40.0 3.43e-01 88.9% 81.8%
3670595 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 37.0 3.33e-01 82.5% 52.6%
6661 4276.1.1.1 ↗ a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.51 40.0 3.47e-01 88.9% 97.1%
4882206 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.51 36.0 3.02e-01 77.8% 86.0%
4033432 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.50 36.0 3.67e-01 77.8% 83.3%
4997576 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.50 35.0 2.96e-01 73.0% 86.4%
3329783 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 39.0 3.44e-01 84.1% 55.8%
5045707 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 36.0 3.53e-01 95.2% 69.3%
3591633 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.50 31.0 2.62e-01 96.8% 35.5%