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MH719082.1__AXY86090.1__X__00035
Bact-VirMH719082.1__AXY86090.1__X__00035
Identity
- Accession:
- MH719082 ↗
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Taxonomy
TaxID: 2301649
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-155_225-278
Domain cluster:
rep: Hypothetical_protein_SPPV_50__NP_659626__Sheeppox_virus__10266__D1-82_143-236
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02739.23 best | 5_3_exonuc_N | 51.5 | 1.40e-13 | 83.8% | 87.8% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zdbA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.87 | 61.0 | 6.92e-01 | 73.5% | 91.7% |
| 1tfrA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.82 | 75.0 | 7.54e-01 | 95.6% | 98.5% |
| 1xo1A02 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.79 | 60.0 | 6.77e-01 | 81.9% | 98.7% |
| 5v07Z01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.78 | 56.0 | 5.63e-01 | 73.5% | 83.5% |
| 3loqA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.64 | 37.0 | 4.67e-01 | 70.6% | 91.5% |
| 2q5cA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 28.0 | 4.02e-01 | 73.0% | 90.7% |
| 4nzpA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 39.0 | 4.72e-01 | 94.6% | 96.4% |
| 4q9aA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 35.0 | 3.48e-01 | 81.9% | 59.4% |
| 2i33B00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.54 | 38.0 | 3.64e-01 | 70.6% | 65.3% |
| 3lncA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 27.0 | 3.30e-01 | 100.0% | 71.9% |
| 3dc7A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 37.0 | 3.67e-01 | 83.3% | 65.7% |
| 4oo3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 34.0 | 3.99e-01 | 73.5% | 89.0% |
| 2pvuA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 26.0 | 3.27e-01 | 73.5% | 74.0% |
| 3on5B02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 34.0 | 3.88e-01 | 94.1% | 83.4% |
| 4gxwB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 41.0 | 3.38e-01 | 81.9% | 85.4% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 36.0 | 4.09e-01 | 71.1% | 98.7% |
| 4hqsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 29.0 | 3.47e-01 | 73.0% | 80.7% |
| 4dqlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 36.0 | 3.98e-01 | 71.1% | 92.5% |
| 3majA01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 36.0 | 3.22e-01 | 73.5% | 54.6% |
| 1eq2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 32.0 | 3.25e-01 | 81.4% | 63.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4040391 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.89 | 65.0 | 6.91e-01 | 73.5% | 93.9% |
| 4029535 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.89 | 64.0 | 6.90e-01 | 73.5% | 93.3% |
| 4031881 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.89 | 64.0 | 6.99e-01 | 73.5% | 92.0% |
| 3261281 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.89 | 64.0 | 7.11e-01 | 73.5% | 92.3% |
| 4238071 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.89 | 64.0 | 6.96e-01 | 73.5% | 93.7% |
| 3831671 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.89 | 64.0 | 6.60e-01 | 73.5% | 93.8% |
| 4157264 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.88 | 64.0 | 6.83e-01 | 73.5% | 91.7% |
| 3942272 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.88 | 64.0 | 7.02e-01 | 73.5% | 94.7% |
| 3969358 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.88 | 64.0 | 7.22e-01 | 73.5% | 96.2% |
| 4125023 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.88 | 63.0 | 6.98e-01 | 73.5% | 92.9% |
| 4031817 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.88 | 63.0 | 6.98e-01 | 73.5% | 92.9% |
| 4995752 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.87 | 63.0 | 7.04e-01 | 73.5% | 94.5% |
| 3387660 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.85 | 62.0 | 6.78e-01 | 73.5% | 91.2% |
| 3838776 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.85 | 61.0 | 6.83e-01 | 73.5% | 92.7% |
| 4322588 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.85 | 68.0 | 7.25e-01 | 81.9% | 100.0% |
| 3964138 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.84 | 68.0 | 7.30e-01 | 82.8% | 99.4% |
| 3293941 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.84 | 67.0 | 6.66e-01 | 81.4% | 95.2% |
| 4355422 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.81 | 67.0 | 7.22e-01 | 97.5% | 98.3% |
| 3596146 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.81 | 58.0 | 5.88e-01 | 73.5% | 92.6% |
| 3329169 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.79 | 57.0 | 6.20e-01 | 73.5% | 90.3% |
| 4299585 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.79 | 69.0 | 7.22e-01 | 97.5% | 98.4% |
| 4324598 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.78 | 65.0 | 6.84e-01 | 97.5% | 93.5% |
| 4165496 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.78 | 68.0 | 7.15e-01 | 97.5% | 98.4% |
| 3683988 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.77 | 56.0 | 5.53e-01 | 73.5% | 83.6% |
| 3739745 | 2006.1.4.20 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I_2 | 0.77 | 60.0 | 5.42e-01 | 79.4% | 89.1% |
| 3942445 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.77 | 66.0 | 6.98e-01 | 97.5% | 97.8% |
| 3743690 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.77 | 51.0 | 5.50e-01 | 73.5% | 77.7% |
| 3719108 | 2006.1.4.5 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XRN_N | 0.76 | 59.0 | 5.16e-01 | 80.4% | 75.3% |
| 3484303 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.75 | 54.0 | 5.66e-01 | 73.5% | 82.6% |
| 3882124 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.75 | 54.0 | 5.35e-01 | 73.5% | 71.2% |
| 3428426 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.75 | 54.0 | 5.46e-01 | 73.5% | 83.4% |
| 4136793 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.74 | 69.0 | 6.84e-01 | 96.1% | 94.8% |
| 3913336 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.73 | 53.0 | 5.56e-01 | 73.5% | 80.5% |
| 3613309 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.72 | 52.0 | 5.08e-01 | 73.5% | 81.8% |
| 3471700 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.70 | 56.0 | 5.34e-01 | 82.4% | 85.1% |
| 3416420 | 2006.1.4.52 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PF27698 | 0.68 | 59.0 | 4.33e-01 | 91.7% | 73.7% |
| 3716763 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.65 | 60.0 | 5.55e-01 | 97.5% | 85.9% |
| 3612297 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.63 | 59.0 | 5.52e-01 | 98.0% | 84.2% |
| 4959195 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.60 | 38.0 | 4.64e-01 | 70.6% | 98.5% |
| 3633256 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 33.0 | 4.03e-01 | 86.3% | 84.6% |
| 5042296 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.58 | 38.0 | 4.59e-01 | 70.6% | 99.3% |
| 3971938 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 40.0 | 4.60e-01 | 70.6% | 98.0% |
| 4971716 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 38.0 | 4.44e-01 | 70.6% | 95.1% |
| 4964532 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 38.0 | 4.45e-01 | 70.6% | 97.9% |
| 4092419 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 35.0 | 3.84e-01 | 91.7% | 76.5% |
| 4053515 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 35.0 | 3.93e-01 | 91.7% | 84.0% |
| 4300793 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 33.0 | 3.87e-01 | 91.7% | 84.1% |
| 3717279 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.54 | 37.0 | 4.21e-01 | 70.6% | 94.9% |
| 5031675 | 2007.5.1.15 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › FkbH_N | 0.52 | 36.0 | 3.64e-01 | 81.9% | 68.3% |
| 3682488 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.52 | 36.0 | 3.95e-01 | 83.8% | 86.1% |
| 3598780 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 48.0 | 4.51e-01 | 98.0% | 84.6% |
D2
high
residues 159-221
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hmlA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.72 | 62.0 | 5.82e-01 | 100.0% | 100.0% |
| 2lpbA00 | 1.10.287.2920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 45.0 | 4.18e-01 | 87.3% | 63.0% |
| 8sfuA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.59 | 34.0 | 2.55e-01 | 92.1% | 23.2% |
| 2fi1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 45.0 | 4.51e-01 | 87.3% | 92.2% |
| 2is6A04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.58 | 45.0 | 3.40e-01 | 85.7% | 41.0% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.56 | 33.0 | 3.12e-01 | 90.5% | 45.5% |
| 4zbwA02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 41.0 | 3.80e-01 | 85.7% | 66.7% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 40.0 | 3.80e-01 | 88.9% | 86.1% |
| 3sk9A00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.52 | 43.0 | 3.04e-01 | 100.0% | 79.6% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942250 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.80 | 68.0 | 5.29e-01 | 93.7% | 68.9% |
| 3641047 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.76 | 61.0 | 5.59e-01 | 85.7% | 96.2% |
| 4995753 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.73 | 62.0 | 5.01e-01 | 93.7% | 63.0% |
| 3956065 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 58.0 | 5.39e-01 | 88.9% | 95.0% |
| 4030601 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 60.0 | 4.96e-01 | 93.7% | 63.5% |
| None | — | 0.72 | 61.0 | 5.45e-01 | 95.2% | 83.3% | |
| 2074406 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.71 | 61.0 | 5.11e-01 | 95.2% | 70.8% |
| 3329195 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.70 | 62.0 | 4.98e-01 | 100.0% | 65.6% |
| 3174628 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.60 | 49.0 | 4.54e-01 | 93.7% | 87.1% |
| 3538287 | 108.1.1.144 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Dockerin_1 | 0.57 | 44.0 | 3.60e-01 | 90.5% | 70.4% |
| 3163612 | 107.1.1.18 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › PF29414 | 0.55 | 38.0 | 2.85e-01 | 73.0% | 85.5% |