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MH727550.1__AYB69434.1__JUICEBOX_5__00005

Bact-Vir

MH727550.1__AYB69434.1__JUICEBOX_5__00005

Identity

Accession:
MH727550 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Juiceboxvirus› Corynebacterium_phage_Juicebox

TaxID: 2301600

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 247-407
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 30.0 4.37e-01 71.4% 96.1%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 28.0 3.87e-01 72.0% 80.2%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 34.0 4.02e-01 80.1% 86.4%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 34.0 3.94e-01 77.0% 85.7%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.55 24.0 3.56e-01 70.2% 94.4%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 4.12e-01 90.7% 89.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 31.0 3.81e-01 72.0% 86.8%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.53 31.0 3.70e-01 85.1% 86.8%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.53 32.0 3.43e-01 86.3% 69.6%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.90e-01 71.4% 92.8%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 28.0 3.16e-01 71.4% 68.1%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.51 26.0 3.28e-01 92.5% 84.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 31.0 3.56e-01 83.9% 81.7%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 27.0 2.73e-01 75.8% 49.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992633 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.71 34.0 4.89e-01 71.4% 98.7%
5014686 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.69 25.0 4.25e-01 70.8% 98.2%
4959385 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.68 33.0 4.74e-01 70.2% 100.0%
5062732 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.67 35.0 4.66e-01 72.7% 94.1%
4463632 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.64 37.0 4.71e-01 74.5% 100.0%
4968653 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.64 36.0 4.62e-01 72.0% 94.7%
4122018 4099.1.1.10 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.64 28.0 3.47e-01 78.9% 65.0%
4544637 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.63 37.0 4.68e-01 75.2% 98.9%
5014685 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 27.0 4.12e-01 72.0% 98.5%
5014277 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 27.0 3.68e-01 72.0% 76.5%
3589620 4312.1.1.11 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin 0.62 34.0 4.45e-01 74.5% 95.6%
3168452 331.10.2.3 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.62 27.0 3.31e-01 80.7% 61.0%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.62 32.0 4.32e-01 87.6% 94.1%
5026576 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 22.0 2.98e-01 73.3% 60.0%
4182548 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.60 32.0 4.05e-01 73.9% 86.3%
5028295 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.60 32.0 4.03e-01 72.0% 87.4%
3588277 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.59 35.0 4.13e-01 70.8% 82.6%
3953302 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.58 25.0 3.13e-01 73.3% 63.5%
3989328 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 34.0 4.36e-01 72.7% 100.0%
82329 372.2.1.0 ↗ a+b complex topology › RNase A-like › EndoU-like › EndoU-like 0.55 45.0 3.82e-01 88.8% 78.3%
3266554 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.54 24.0 3.38e-01 87.0% 82.5%
5032559 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 29.0 3.75e-01 74.5% 93.3%
4973640 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 23.0 3.03e-01 79.5% 72.2%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 26.0 3.07e-01 72.7% 66.4%
5036807 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.52 27.0 3.37e-01 88.8% 82.1%
3881671 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.52 37.0 4.20e-01 83.2% 99.2%
D2 medium residues 1-153
PDB
Domain cluster: rep: NC_048021.1__YP_009807128.1__HOT75_gp014__00014__D1-180
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.61 31.0 3.74e-01 91.5% 73.0%
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.58 23.0 2.97e-01 86.3% 60.5%
3ig5A03 1.10.150.710 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Glutamate cysteine ligase subdomain 0.57 23.0 3.09e-01 93.5% 67.9%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 34.0 4.05e-01 97.4% 88.3%
2qupA00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.56 38.0 4.27e-01 93.5% 89.9%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 36.0 4.19e-01 77.1% 90.8%
4uy8X00 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.55 20.0 2.69e-01 86.9% 58.4%
4xpwA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.54 37.0 3.93e-01 94.1% 80.2%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 37.0 4.14e-01 93.5% 93.2%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.53 34.0 3.82e-01 93.5% 83.8%
8e83B01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 40.0 2.94e-01 80.4% 68.2%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.52 33.0 3.87e-01 88.2% 91.5%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.51 34.0 3.83e-01 90.8% 89.4%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.51 36.0 3.88e-01 94.1% 83.5%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 37.0 3.54e-01 94.1% 63.2%
1h6gA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 37.0 4.14e-01 92.8% 96.6%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 37.0 4.05e-01 94.1% 93.4%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 37.0 4.03e-01 92.2% 92.7%
1dowA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 36.0 3.32e-01 94.1% 55.1%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 38.0 4.18e-01 93.5% 98.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3724091 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.62 50.0 4.22e-01 86.3% 91.4%
4578841 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 34.0 4.37e-01 75.2% 94.4%
3233605 5001.1.1.27 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre 0.55 32.0 2.65e-01 74.5% 29.7%
3509109 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.54 38.0 4.27e-01 91.5% 95.7%
3234201 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.53 37.0 4.06e-01 91.5% 88.8%
2396196 601.1.2.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Vinculin 0.52 38.0 4.10e-01 91.5% 87.1%
4947493 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.52 34.0 3.60e-01 99.3% 73.3%
3272925 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 37.0 4.03e-01 91.5% 88.0%
3205696 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.52 40.0 4.22e-01 79.1% 90.4%
3623172 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.52 37.0 3.95e-01 91.5% 85.4%
3979628 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 41.0 4.14e-01 84.3% 89.0%
3731546 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 43.0 4.21e-01 93.5% 81.8%
2060764 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 37.0 4.06e-01 98.7% 89.8%
3500075 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.51 36.0 3.96e-01 92.2% 91.7%
3239359 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 38.0 2.99e-01 77.1% 38.7%
2035448 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.50 36.0 3.32e-01 94.1% 55.1%
D3 medium residues 154-242
PDB
Domain cluster: rep: MH248947.1__AWY07573.1__SEA_YOSIF_9__00009__D259-342
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25310.2 best VG15 76.7 4.30e-21 96.6% 33.5%