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MH727553.1__AYB69868.1__SEA_LITTLELAF_64__00064

Bact-Vir

MH727553.1__AYB69868.1__SEA_LITTLELAF_64__00064

Identity

Accession:
MH727553 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05305.20 best DUF732 30.9 4.10e-07 100.0% 68.1%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 62.0 6.19e-01 100.0% 77.8%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 59.0 5.58e-01 96.2% 63.5%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 56.0 4.86e-01 94.2% 48.8%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 63.0 5.51e-01 100.0% 59.0%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.76 67.0 5.63e-01 100.0% 62.9%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 54.0 5.72e-01 98.1% 90.9%
3bjdA02 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.75 45.0 2.87e-01 84.6% 14.1%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 57.0 3.64e-01 100.0% 18.0%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.62e-01 96.2% 97.9%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.69 57.0 4.00e-01 100.0% 27.6%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.68 55.0 4.73e-01 96.2% 61.1%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.68 55.0 3.85e-01 88.5% 63.7%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.67 58.0 4.61e-01 100.0% 79.1%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.66 56.0 4.97e-01 100.0% 64.2%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 55.0 3.99e-01 100.0% 31.9%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.64 51.0 4.85e-01 98.1% 75.0%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.63 51.0 3.67e-01 100.0% 28.7%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.63 50.0 4.81e-01 100.0% 78.7%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.62 54.0 4.51e-01 100.0% 90.4%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.62 47.0 4.26e-01 88.5% 60.0%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 49.0 3.40e-01 96.2% 28.8%
2imgA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 50.0 3.70e-01 96.2% 34.9%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 49.0 4.32e-01 100.0% 71.6%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 46.0 4.37e-01 98.1% 69.7%
2g6zA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 49.0 3.68e-01 98.1% 34.7%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.60 49.0 4.09e-01 100.0% 86.5%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 47.0 4.37e-01 96.2% 68.9%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 49.0 3.74e-01 98.1% 38.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.58 37.0 3.46e-01 90.4% 50.7%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.58 50.0 4.11e-01 100.0% 84.8%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 48.0 4.19e-01 100.0% 83.9%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 47.0 3.56e-01 98.1% 35.4%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 50.0 3.78e-01 100.0% 46.5%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.57 36.0 3.38e-01 84.6% 50.0%
2pziB03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 47.0 3.47e-01 96.2% 69.3%
5jqkA03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.57 46.0 3.00e-01 100.0% 77.8%
5hb0D01 1.20.120.1880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain 0.56 45.0 2.96e-01 94.2% 23.9%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.54 43.0 4.03e-01 100.0% 83.1%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.54 43.0 3.68e-01 100.0% 98.0%
2blfB01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.53 44.0 4.25e-01 100.0% 82.5%
2qguA02 1.10.10.640 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein 0.53 40.0 3.57e-01 82.7% 62.8%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 46.0 3.37e-01 100.0% 77.4%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 39.0 3.76e-01 88.5% 75.4%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.50 41.0 3.38e-01 92.3% 77.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971149 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 62.0 5.31e-01 94.2% 48.8%
4022380 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 65.0 5.22e-01 98.1% 45.7%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 65.0 6.25e-01 100.0% 80.0%
3277622 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.79 71.0 4.15e-01 100.0% 22.7%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 65.0 6.38e-01 98.1% 85.5%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 63.0 6.04e-01 98.1% 78.3%
3740014 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 61.0 5.57e-01 100.0% 67.1%
4501343 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.76 65.0 6.41e-01 100.0% 92.7%
3617137 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 6.18e-01 98.1% 87.3%
4972252 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.75 65.0 4.72e-01 96.2% 38.6%
3987909 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.75 60.0 4.46e-01 100.0% 34.8%
3948842 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 5.88e-01 98.1% 85.5%
5022218 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.74 63.0 4.89e-01 96.2% 47.0%
3739094 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.74e-01 96.2% 75.4%
3618803 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 5.81e-01 98.1% 80.0%
3244407 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 61.0 5.83e-01 98.1% 80.0%
1323419 316.1.1.34 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DncV-like_NTFase 0.73 62.0 4.02e-01 100.0% 23.9%
4167193 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.73 57.0 5.95e-01 92.3% 100.0%
5034762 195.1.1.0 alpha complex topology › NusB-like › NusB-like › NusB-like 0.72 64.0 4.72e-01 100.0% 56.3%
4017824 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 59.0 5.32e-01 98.1% 66.7%
4011476 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.32e-01 98.1% 66.7%
4978898 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 54.0 5.69e-01 92.3% 97.8%
5053360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 62.0 5.31e-01 100.0% 63.5%
3261605 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.71 60.0 5.31e-01 100.0% 81.2%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.75e-01 100.0% 81.5%
3267034 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 56.0 5.66e-01 100.0% 98.0%
4271175 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.69 59.0 4.33e-01 98.1% 36.3%
3229051 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 58.0 5.27e-01 100.0% 70.7%
4500830 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.68 52.0 5.28e-01 96.2% 92.0%
5028090 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.68 52.0 3.94e-01 94.2% 32.4%
4281410 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.67 55.0 5.23e-01 98.1% 95.4%
5032990 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.67 55.0 5.13e-01 100.0% 80.0%
3269159 101.1.1.89 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 0.67 53.0 5.26e-01 100.0% 89.1%
4979717 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.66 56.0 3.87e-01 100.0% 27.4%
1883360 1101.1.1.1 alpha bundles › Uncharacterized protein LPG2271 › Uncharacterized protein LPG2271 › Uncharacterized protein LPG2271 › DUF5638 0.65 53.0 4.26e-01 96.2% 44.9%
5040698 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.65 54.0 5.23e-01 100.0% 96.7%
3512113 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.65 54.0 3.33e-01 98.1% 28.4%
5059392 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.65 55.0 3.79e-01 98.1% 85.8%
3970076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.46e-01 96.2% 98.0%
4596379 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.65 53.0 4.95e-01 100.0% 87.1%
4955657 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.65 55.0 3.49e-01 100.0% 62.8%
3676147 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.65 55.0 4.85e-01 100.0% 78.8%
4982049 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 41.0 4.04e-01 76.9% 61.8%
3948771 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 52.0 4.72e-01 96.2% 76.0%
5043155 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.63 54.0 4.18e-01 100.0% 73.6%
5029427 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.63 51.0 4.95e-01 100.0% 90.0%
4995264 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.62 50.0 3.60e-01 98.1% 95.4%
3942571 101.1.1.198 alpha arrays › HTH › HTH › Three-helical HTH › KorB 0.62 48.0 4.58e-01 90.4% 73.8%
3593355 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.59 48.0 4.08e-01 96.2% 60.0%
3709633 509.1.1.9 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.58 46.0 3.87e-01 96.2% 49.0%
169215 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.58 47.0 3.56e-01 98.1% 35.4%
3252230 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.57 51.0 3.42e-01 100.0% 74.9%
4996069 604.10.1.0 alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac 0.55 46.0 3.90e-01 96.2% 78.9%
4994844 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.55 45.0 3.06e-01 98.1% 23.2%
4982694 3843.1.1.35 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF1634 0.55 39.0 3.24e-01 76.9% 83.7%