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MH727593.1__AXY83342.1__X__00025
Bact-VirMH727593.1__AXY83342.1__X__00025
Identity
- Accession:
- MH727593 ↗
- Kingdom:
- phage
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-85
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.70 | 51.0 | 4.92e-01 | 75.3% | 82.2% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.67 | 49.0 | 4.76e-01 | 75.3% | 83.0% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.66 | 48.0 | 4.52e-01 | 75.3% | 77.9% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 47.0 | 4.39e-01 | 76.5% | 67.6% |
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.64 | 46.0 | 4.29e-01 | 75.3% | 63.1% |
| 2kouA00 | 3.30.160.380 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain | 0.64 | 45.0 | 4.14e-01 | 72.8% | 69.6% |
| 7d27A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.62 | 48.0 | 3.51e-01 | 84.0% | 50.4% |
| 4emyA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 52.0 | 4.06e-01 | 91.4% | 54.1% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 43.0 | 4.12e-01 | 76.5% | 74.2% |
| 2dlxA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 42.0 | 3.86e-01 | 76.5% | 69.0% |
| 4bubA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.59 | 46.0 | 3.38e-01 | 85.2% | 46.1% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.59 | 42.0 | 3.70e-01 | 76.5% | 91.3% |
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 48.0 | 4.10e-01 | 88.9% | 72.3% |
| 3vp7A00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.58 | 46.0 | 3.66e-01 | 85.2% | 81.9% |
| 1k3sA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 41.0 | 3.79e-01 | 75.3% | 89.8% |
| 4cy8A03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.57 | 40.0 | 3.28e-01 | 72.8% | 50.6% |
| 3nm6B00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.57 | 40.0 | 2.94e-01 | 72.8% | 96.1% |
| 2rb7A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 41.0 | 2.88e-01 | 75.3% | 85.4% |
| 3rq1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 49.0 | 3.97e-01 | 93.8% | 57.5% |
| 1dq3A02 | 3.30.160.90 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 40.0 | 4.12e-01 | 74.1% | 81.6% |
| 1svvB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 43.0 | 4.19e-01 | 82.7% | 97.8% |
| 4muoA02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.56 | 38.0 | 2.80e-01 | 71.6% | 84.0% |
| 3r5gA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 45.0 | 3.38e-01 | 87.7% | 86.7% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 45.0 | 3.07e-01 | 92.6% | 83.5% |
| 3khnB00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.55 | 42.0 | 3.37e-01 | 81.5% | 74.5% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 46.0 | 2.92e-01 | 93.8% | 30.6% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 44.0 | 3.29e-01 | 86.4% | 87.3% |
| 2o1bA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 45.0 | 3.67e-01 | 90.1% | 76.0% |
| 4c12A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.54 | 43.0 | 3.19e-01 | 90.1% | 47.5% |
| 2zovA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.54 | 41.0 | 3.23e-01 | 80.2% | 73.5% |
| 2in3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 37.0 | 3.80e-01 | 75.3% | 75.3% |
| 4qdiA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 39.0 | 2.90e-01 | 77.8% | 31.9% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 40.0 | 3.95e-01 | 85.2% | 87.9% |
| 1o70A02 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.53 | 41.0 | 3.40e-01 | 86.4% | 97.4% |
| 3h1tA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.53 | 37.0 | 3.20e-01 | 74.1% | 83.2% |
| 4qt4A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.52 | 38.0 | 3.03e-01 | 80.2% | 86.2% |
| 1o4sA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 43.0 | 3.53e-01 | 91.4% | 70.9% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.51 | 37.0 | 3.23e-01 | 77.8% | 61.1% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024884 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 43.0 | 4.27e-01 | 72.8% | 52.9% |
| 5037621 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.70 | 51.0 | 4.85e-01 | 76.5% | 81.1% |
| 5045089 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.70 | 51.0 | 4.74e-01 | 76.5% | 82.0% |
| 5048580 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.69 | 33.0 | 3.28e-01 | 74.1% | 40.4% |
| 4043415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 49.0 | 3.02e-01 | 74.1% | 16.1% |
| 3329783 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.68 | 49.0 | 4.64e-01 | 75.3% | 78.9% |
| 3670595 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 48.0 | 4.60e-01 | 75.3% | 76.8% |
| 3436093 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 48.0 | 4.99e-01 | 75.3% | 98.7% |
| 4012540 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 48.0 | 4.95e-01 | 74.1% | 92.0% |
| 3403782 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.66 | 47.0 | 5.19e-01 | 75.3% | 100.0% |
| 3802643 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 46.0 | 4.40e-01 | 74.1% | 73.7% |
| 4929483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 50.0 | 4.27e-01 | 80.2% | 55.0% |
| 3663237 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 45.0 | 4.57e-01 | 72.8% | 96.2% |
| 3627771 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 47.0 | 4.65e-01 | 77.8% | 83.5% |
| 3510389 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 45.0 | 4.41e-01 | 74.1% | 76.4% |
| 3618540 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 44.0 | 4.56e-01 | 74.1% | 78.7% |
| 5023930 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 44.0 | 4.42e-01 | 75.3% | 74.1% |
| 3710891 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.62 | 44.0 | 4.09e-01 | 72.8% | 73.0% |
| 3700288 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 43.0 | 4.08e-01 | 71.6% | 75.8% |
| 4030804 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.62 | 47.0 | 3.21e-01 | 81.5% | 36.9% |
| 3881061 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.62 | 43.0 | 4.76e-01 | 72.8% | 95.4% |
| 3510695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 45.0 | 4.54e-01 | 76.5% | 85.0% |
| 4027266 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.61 | 51.0 | 4.20e-01 | 90.1% | 63.2% |
| 3456246 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.60 | 45.0 | 4.35e-01 | 80.2% | 94.4% |
| 4169235 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 42.0 | 3.67e-01 | 74.1% | 91.1% |
| 4978506 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.59 | 54.0 | 4.03e-01 | 98.8% | 48.4% |
| 4952130 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.59 | 54.0 | 3.86e-01 | 100.0% | 39.6% |
| 4976626 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.59 | 54.0 | 3.87e-01 | 100.0% | 42.7% |
| 4953780 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.58 | 48.0 | 3.27e-01 | 91.4% | 49.5% |
| 4323155 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 42.0 | 3.92e-01 | 75.3% | 77.0% |
| 5048568 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.58 | 40.0 | 3.07e-01 | 74.1% | 51.7% |
| 3838957 | 3439.1.1.0 ↗ | a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain | 0.56 | 40.0 | 4.26e-01 | 75.3% | 88.6% |
| 5073144 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.56 | 39.0 | 2.81e-01 | 74.1% | 52.4% |
| 3480250 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 42.0 | 4.13e-01 | 80.2% | 80.0% |
| 4826080 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 46.0 | 4.66e-01 | 91.4% | 100.0% |
| 3799834 | 3409.1.1.2 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › VPS38 | 0.56 | 43.0 | 3.57e-01 | 82.7% | 86.2% |
| 3972594 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.54 | 49.0 | 3.44e-01 | 100.0% | 34.9% |
| 5053484 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 37.0 | 3.15e-01 | 70.4% | 75.6% |
| 4964255 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.54 | 42.0 | 3.29e-01 | 85.2% | 58.4% |
| 4220398 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.54 | 39.0 | 3.21e-01 | 79.0% | 37.6% |
| 4097938 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.54 | 43.0 | 3.87e-01 | 85.2% | 90.9% |
| 3400449 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 36.0 | 2.81e-01 | 76.5% | 32.0% |
| 3882796 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.54 | 36.0 | 3.61e-01 | 76.5% | 65.9% |
| 1866795 | 2484.1.1.91 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like | 0.54 | 40.0 | 2.99e-01 | 91.4% | 29.3% |
| 3983134 | 223.1.1.113 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 | 0.53 | 44.0 | 4.18e-01 | 96.3% | 100.0% |
| 4945408 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 38.0 | 3.35e-01 | 75.3% | 92.5% |
| 4017381 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.52 | 36.0 | 3.37e-01 | 72.8% | 90.5% |
| 4953866 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.52 | 42.0 | 3.20e-01 | 91.4% | 45.1% |
| 3252404 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.52 | 39.0 | 3.68e-01 | 77.8% | 84.2% |
| 3927846 | 109.4.1.1948 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle | 0.52 | 47.0 | 3.29e-01 | 100.0% | 84.4% |
| 3968879 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.52 | 35.0 | 2.83e-01 | 70.4% | 93.5% |
| 3192402 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 35.0 | 2.87e-01 | 71.6% | 67.9% |
| 3926232 | 3409.1.1.0 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain | 0.51 | 43.0 | 3.49e-01 | 91.4% | 84.7% |