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MH727593.1__AXY83372.1__X__00055

Bact-Vir

MH727593.1__AXY83372.1__X__00055

Identity

Accession:
MH727593 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-88_178-214
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06763.18 best Minor_tail_Z 25.6 1.40e-05 76.2% 40.5%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 43.0 4.52e-01 85.2% 65.7%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.72 37.0 4.61e-01 76.2% 82.2%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.71 46.0 4.64e-01 91.8% 64.8%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 39.0 4.58e-01 87.7% 78.0%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 37.0 4.63e-01 88.5% 86.1%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 36.0 4.65e-01 86.9% 96.8%
2jsxA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.66 36.0 4.40e-01 90.2% 87.3%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 39.0 4.30e-01 91.0% 73.2%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.65 43.0 4.62e-01 89.3% 79.4%
4e9jA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.64 35.0 4.51e-01 82.0% 94.2%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 39.0 4.22e-01 91.8% 73.5%
3i3wA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.64 40.0 4.72e-01 90.2% 98.7%
2crlA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 34.0 4.13e-01 87.7% 87.0%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.63 34.0 4.19e-01 87.7% 84.2%
4wxjB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 44.0 4.11e-01 72.1% 93.2%
2z30B00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.62 30.0 3.76e-01 85.2% 80.0%
2op5B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 4.68e-01 93.4% 89.0%
2ja9A02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.61 35.0 4.08e-01 86.9% 79.8%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 36.0 4.19e-01 87.7% 86.4%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.60 35.0 3.58e-01 85.2% 59.1%
2yqrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 46.0 4.91e-01 97.5% 97.1%
5ao2B02 3.30.70.2760 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 4.41e-01 86.9% 92.1%
6ahuH01 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.59 38.0 4.23e-01 91.0% 85.3%
2ctfA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 36.0 3.87e-01 96.7% 72.5%
7ocxC01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 35.0 4.15e-01 87.7% 93.4%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 41.0 4.33e-01 91.0% 83.3%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 41.0 3.55e-01 74.6% 88.0%
2grvA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.57 37.0 3.88e-01 92.6% 70.8%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.64e-01 70.5% 81.5%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.36e-01 70.5% 70.6%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.56 37.0 3.91e-01 93.4% 77.4%
2uuzB00 1.10.10.2020 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam 0.55 36.0 4.20e-01 85.2% 94.1%
6w6vE01 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.55 44.0 4.06e-01 88.5% 67.7%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 41.0 3.31e-01 81.1% 75.5%
3u2rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.08e-01 82.8% 94.8%
5w1eA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 37.0 3.27e-01 74.6% 100.0%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.76e-01 98.4% 72.8%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.54e-01 74.6% 83.5%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 34.0 3.37e-01 96.7% 63.6%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 39.0 3.97e-01 80.3% 84.5%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.48e-01 77.0% 81.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3803472 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.73 42.0 5.28e-01 98.4% 97.1%
3390313 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.72 42.0 4.93e-01 87.7% 82.4%
4316518 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.72 47.0 5.30e-01 91.0% 88.9%
3274318 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.69 36.0 4.53e-01 86.9% 87.1%
4034610 304.31.1.2 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › Wzz 0.68 55.0 5.52e-01 90.2% 85.6%
3402258 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.68 48.0 5.23e-01 88.5% 89.0%
4061057 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.68 44.0 5.00e-01 94.3% 90.0%
3177315 304.8.1.93 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF29153 0.68 42.0 4.87e-01 88.5% 89.4%
3674421 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.67 35.0 4.38e-01 87.7% 85.7%
4443042 304.5.1.10 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CBD_PlyG 0.66 35.0 4.59e-01 83.6% 95.4%
3457319 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.66 34.0 4.18e-01 84.4% 78.7%
4014842 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 35.0 4.44e-01 87.7% 92.3%
5040496 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.66 35.0 4.17e-01 82.8% 76.2%
5068382 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.66 43.0 4.65e-01 90.2% 80.0%
5046535 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.65 42.0 4.48e-01 86.9% 75.2%
5029961 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.64 41.0 4.14e-01 88.5% 62.4%
4977614 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.64 41.0 4.50e-01 87.7% 79.0%
3488179 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.64 45.0 5.02e-01 99.2% 98.9%
4159687 304.58.1.0 a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.64 53.0 4.10e-01 91.8% 43.5%
4217176 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.64 41.0 4.49e-01 100.0% 80.0%
4976045 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.64 41.0 4.31e-01 88.5% 71.8%
5031880 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.63 41.0 4.28e-01 87.7% 72.2%
4998289 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.63 41.0 4.39e-01 87.7% 76.2%
5078076 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.63 41.0 4.48e-01 86.9% 80.0%
3519117 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 47.0 4.00e-01 77.0% 95.3%
5061644 304.11.1.15 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Peptidase_S8 0.63 35.0 3.89e-01 84.4% 68.4%
5042940 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.63 42.0 4.32e-01 87.7% 72.2%
3602384 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.62 49.0 5.00e-01 96.7% 85.0%
4973750 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.62 36.0 4.37e-01 85.2% 94.5%
3252416 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.61 42.0 4.24e-01 86.9% 70.8%
4886155 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.61 42.0 4.01e-01 91.0% 58.7%
3273894 304.120.1.17 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF28943 0.60 39.0 4.37e-01 91.0% 88.9%
3282948 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.59 43.0 3.90e-01 75.4% 86.3%
5020886 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.59 28.0 3.60e-01 85.2% 85.0%
3989089 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 42.0 4.18e-01 73.8% 100.0%
3965160 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 40.0 3.35e-01 73.8% 85.6%
4636556 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.56 45.0 3.42e-01 86.1% 98.6%
4194516 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.56 46.0 3.42e-01 86.1% 93.8%
3668622 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 47.0 4.62e-01 93.4% 86.7%
4033334 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.56 42.0 3.95e-01 78.7% 100.0%
4066114 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.55 45.0 3.48e-01 87.7% 97.1%
3517652 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.54 43.0 3.19e-01 85.2% 63.7%
3941595 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.54 43.0 3.62e-01 85.2% 81.5%
3413287 11.1.1.796 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Shg 0.54 40.0 3.75e-01 87.7% 62.6%
997940 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 37.0 3.52e-01 71.3% 83.1%
4201017 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 37.0 3.42e-01 73.0% 73.8%
3282901 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.52 41.0 2.98e-01 84.4% 43.7%
4946790 223.1.1.122 a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA 0.52 37.0 3.38e-01 74.6% 89.1%
4185652 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.52 42.0 3.28e-01 89.3% 98.2%
3279462 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.51 38.0 3.59e-01 76.2% 81.4%
4009014 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.51 41.0 3.47e-01 85.2% 81.5%
166472 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 37.0 3.54e-01 74.6% 83.5%
4676268 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.51 41.0 3.00e-01 85.2% 58.4%
2796734 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.50 36.0 3.38e-01 73.8% 83.2%
3195457 5050.1.1.23 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CLN3 0.50 38.0 2.99e-01 79.5% 69.2%
2796357 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.50 35.0 3.39e-01 72.1% 83.0%
D2 high residues 93-173
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.52 44.0 3.11e-01 100.0% 85.8%
4lg9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.61e-01 84.0% 58.9%