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MH729379.1__AXY81136.1__AVP_20__00020
Bact-VirMH729379.1__AXY81136.1__AVP_20__00020
Identity
- Accession:
- MH729379 ↗
- Kingdom:
- phage
Quality
54.3
mean pLDDT
Taxonomy
TaxID: 2495576
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
rep: MW980068.1__QXV74458.1__X__00048__D3-65
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uzgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 62.0 | 4.85e-01 | 98.2% | 49.6% |
| 7o49B01 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 54.0 | 4.68e-01 | 100.0% | 100.0% |
| 3dc4A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.60 | 49.0 | 3.22e-01 | 100.0% | 23.7% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.59 | 49.0 | 4.72e-01 | 100.0% | 88.4% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.59 | 49.0 | 4.71e-01 | 98.2% | 89.6% |
| 1vw4F02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.58 | 45.0 | 4.02e-01 | 92.9% | 90.2% |
| 5ao6A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.58 | 44.0 | 3.91e-01 | 91.1% | 100.0% |
| 3ix1A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 46.0 | 3.96e-01 | 98.2% | 97.1% |
| 2v8pA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.57 | 47.0 | 3.89e-01 | 100.0% | 97.4% |
| 6fv3C01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 42.0 | 2.72e-01 | 83.9% | 34.5% |
| 1t8rA01 | 3.30.1730.10 | Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain | 0.56 | 46.0 | 3.53e-01 | 100.0% | 43.7% |
| 1xa3A02 | 3.30.1540.10 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › formyl-coa transferase, domain 3 | 0.56 | 45.0 | 3.80e-01 | 92.9% | 77.7% |
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 41.0 | 3.47e-01 | 80.4% | 93.1% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.55 | 45.0 | 4.26e-01 | 100.0% | 85.1% |
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.55 | 46.0 | 4.32e-01 | 100.0% | 100.0% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.55 | 36.0 | 3.98e-01 | 96.4% | 100.0% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 44.0 | 4.00e-01 | 98.2% | 94.0% |
| 3cedA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 45.0 | 3.82e-01 | 96.4% | 84.7% |
| 2e9xB01 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.53 | 43.0 | 4.15e-01 | 94.6% | 80.3% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 43.0 | 3.90e-01 | 100.0% | 97.6% |
| 1xhcA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 36.0 | 3.80e-01 | 76.8% | 87.5% |
| 1mwyA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 41.0 | 3.89e-01 | 98.2% | 97.3% |
| 1qupA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.80e-01 | 92.9% | 92.9% |
| 3anwA02 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.51 | 41.0 | 4.07e-01 | 91.1% | 87.9% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 38.0 | 2.90e-01 | 83.9% | 79.2% |
| 4fsdA02 | 3.40.5.100 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.50 | 40.0 | 3.60e-01 | 94.6% | 64.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1554318 | 11.1.4.36 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA | 0.70 | 62.0 | 4.84e-01 | 100.0% | 50.8% |
| 4936970 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.65 | 57.0 | 4.50e-01 | 98.2% | 98.3% |
| 4472004 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.61 | 51.0 | 4.70e-01 | 98.2% | 80.0% |
| 3428826 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 50.0 | 4.54e-01 | 98.2% | 91.3% |
| 3964296 | 230.4.1.1 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE | 0.60 | 46.0 | 3.89e-01 | 98.2% | 48.0% |
| 5078772 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.59 | 49.0 | 4.76e-01 | 98.2% | 100.0% |
| 3500573 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.57 | 48.0 | 3.05e-01 | 100.0% | 23.6% |
| 432311 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.56 | 47.0 | 4.26e-01 | 100.0% | 78.8% |
| 4682714 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 46.0 | 4.35e-01 | 98.2% | 98.6% |
| 5055750 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.55 | 43.0 | 4.52e-01 | 87.5% | 98.0% |
| 5024995 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.55 | 44.0 | 4.48e-01 | 91.1% | 94.3% |
| 3275821 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 45.0 | 4.18e-01 | 100.0% | 97.5% |
| 5011939 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.55 | 45.0 | 3.52e-01 | 94.6% | 46.2% |
| 4990834 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.55 | 42.0 | 4.34e-01 | 96.4% | 100.0% |
| 5069341 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.54 | 43.0 | 4.49e-01 | 87.5% | 98.0% |
| 5069643 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.54 | 44.0 | 4.54e-01 | 91.1% | 96.2% |
| 3922636 | 109.4.1.2802 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ECM29_N, ARM_ECM29 | 0.54 | 36.0 | 2.27e-01 | 71.4% | 19.7% |
| 4935547 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.54 | 43.0 | 4.52e-01 | 89.3% | 100.0% |
| 4978275 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.54 | 43.0 | 4.38e-01 | 91.1% | 94.5% |
| 4973337 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.53 | 45.0 | 4.57e-01 | 96.4% | 100.0% |
| 3816888 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 42.0 | 4.04e-01 | 96.4% | 95.7% |
| 3915794 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 42.0 | 3.45e-01 | 100.0% | 46.4% |
| 5045837 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.53 | 42.0 | 4.17e-01 | 89.3% | 83.3% |
| 3293450 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 41.0 | 3.96e-01 | 98.2% | 98.6% |
| 3666791 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 40.0 | 4.15e-01 | 98.2% | 100.0% |
| 3674421 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 41.0 | 3.98e-01 | 98.2% | 98.6% |
| 4938054 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 41.0 | 3.80e-01 | 96.4% | 92.5% |
| 4319130 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.52 | 37.0 | 2.56e-01 | 83.9% | 67.6% |
| 3739494 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 40.0 | 3.69e-01 | 94.6% | 88.7% |
| 5035786 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.51 | 39.0 | 4.12e-01 | 89.3% | 100.0% |
| 4612662 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.51 | 42.0 | 3.68e-01 | 100.0% | 90.3% |
| 4932084 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.50 | 38.0 | 3.96e-01 | 89.3% | 100.0% |
| 4680909 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.50 | 36.0 | 2.32e-01 | 80.4% | 17.0% |
D2
high
residues 84-160