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MH729379.1__AXY81177.1__AVP_61__00061

Bact-Vir

MH729379.1__AXY81177.1__AVP_61__00061

Identity

Accession:
MH729379 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Aerococcus_phage_vB_AviM_AVP

TaxID: 2495576

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-195
PDB
Domain cluster: rep: OX463805.1__CAI9187511.1__X__00006__D38-163
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23828.2 best DUF7198 139.9 1.30e-40 100.0% 56.6%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 38.0 3.65e-01 85.5% 50.0%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 33.0 3.89e-01 75.8% 72.9%
1vjoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 28.0 2.80e-01 81.5% 42.0%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 37.0 3.30e-01 73.4% 44.6%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 30.0 3.42e-01 87.1% 69.0%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 36.0 3.90e-01 91.9% 78.1%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 28.0 3.25e-01 76.6% 65.6%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 38.0 2.89e-01 78.2% 61.9%
1e3uD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 3.11e-01 78.2% 90.1%
1ow1A00 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.51 42.0 3.87e-01 90.3% 88.6%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 38.0 3.68e-01 78.2% 100.0%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 32.0 3.39e-01 79.0% 72.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004971 304.28.1.38 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C 0.68 38.0 3.35e-01 71.0% 36.6%
4514959 304.20.1.4 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.67 38.0 3.32e-01 71.0% 37.0%
3236386 304.109.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.61 36.0 4.38e-01 79.0% 94.7%
3224406 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.60 33.0 3.88e-01 75.0% 78.8%
4200948 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.59 33.0 3.62e-01 80.6% 66.0%
4017263 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 42.0 4.71e-01 78.2% 96.8%
3479119 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 40.0 3.95e-01 86.3% 64.4%
4182228 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.58 36.0 4.18e-01 73.4% 90.6%
2390755 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.57 39.0 4.43e-01 90.3% 96.6%
4395692 304.48.1.22 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.57 31.0 3.23e-01 70.2% 53.9%
3993377 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 38.0 4.40e-01 82.3% 100.0%
3706674 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 41.0 4.11e-01 91.1% 73.6%
3625383 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 38.0 4.33e-01 79.0% 98.8%
3721374 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 40.0 4.42e-01 78.2% 93.0%
3490944 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.55 37.0 3.57e-01 79.0% 58.6%
4025199 306.7.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain 0.55 43.0 4.16e-01 85.5% 94.5%
4025839 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 45.0 3.72e-01 90.3% 96.6%
5077534 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.51 43.0 3.49e-01 94.4% 89.6%
3684722 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.51 37.0 4.09e-01 90.3% 95.0%
3392977 304.55.2.9 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › DUF4780 0.50 31.0 3.58e-01 89.5% 84.4%
D2 high residues 199-271
PDB
Domain cluster: representative
D3 medium residues 1-69
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23828.2 best DUF7198 36.4 5.30e-09 97.1% 29.8%