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MH729379.1__AXY81183.1__AVP_67__00067
Bact-VirMH729379.1__AXY81183.1__AVP_67__00067
Identity
- Accession:
- MH729379 ↗
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Taxonomy
TaxID: 2495576
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-96
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.65 | 36.0 | 3.38e-01 | 100.0% | 44.7% |
| 2ba0A01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 43.0 | 5.01e-01 | 78.3% | 100.0% |
| 3m7nA01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 45.0 | 5.08e-01 | 89.9% | 100.0% |
| 2nn6H01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.62 | 45.0 | 4.98e-01 | 95.7% | 98.2% |
| 1ncsA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.62 | 27.0 | 3.23e-01 | 82.6% | 53.2% |
| 1r1tA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 3.85e-01 | 76.8% | 68.4% |
| 2je6I01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 43.0 | 4.58e-01 | 81.2% | 89.7% |
| 5eqxA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.59 | 41.0 | 3.67e-01 | 73.9% | 66.3% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.58 | 31.0 | 3.03e-01 | 88.4% | 44.7% |
| 4ifdG01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 46.0 | 4.80e-01 | 85.5% | 100.0% |
| 7sz8A01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.58 | 41.0 | 3.61e-01 | 73.9% | 62.6% |
| 1n7oA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.57 | 38.0 | 3.60e-01 | 92.8% | 56.5% |
| 1q90C00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 38.0 | 3.24e-01 | 72.5% | 82.5% |
| 3jsyA02 | 3.90.105.20 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Ribosomal protein L10, N-terminal fragment, domain II | 0.55 | 38.0 | 3.67e-01 | 73.9% | 71.2% |
| 1f1sA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.53 | 37.0 | 3.53e-01 | 88.4% | 61.0% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.96e-01 | 91.3% | 81.9% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.53 | 46.0 | 3.86e-01 | 98.6% | 68.0% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.53 | 34.0 | 2.83e-01 | 73.9% | 37.0% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.10e-01 | 79.7% | 90.2% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3907112 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.80 | 38.0 | 3.90e-01 | 82.6% | 47.7% |
| 3556658 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.78 | 38.0 | 3.67e-01 | 84.1% | 42.7% |
| 3750184 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.78 | 37.0 | 3.67e-01 | 84.1% | 42.7% |
| 5068989 | 325.1.8.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 | 0.77 | 52.0 | 5.93e-01 | 84.1% | 98.0% |
| 3817641 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.71 | 44.0 | 4.81e-01 | 87.0% | 75.9% |
| 3815246 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.71 | 47.0 | 4.83e-01 | 87.0% | 72.3% |
| 3832467 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.70 | 44.0 | 4.34e-01 | 87.0% | 58.7% |
| 3805371 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.70 | 44.0 | 4.71e-01 | 87.0% | 73.3% |
| 3816107 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.68 | 46.0 | 5.05e-01 | 88.4% | 89.1% |
| 3811435 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.67 | 42.0 | 4.38e-01 | 87.0% | 67.7% |
| 4494179 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.66 | 48.0 | 5.19e-01 | 85.5% | 96.4% |
| 4661116 | 325.1.8.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 | 0.66 | 45.0 | 4.97e-01 | 81.2% | 90.9% |
| 5000803 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.65 | 48.0 | 5.22e-01 | 84.1% | 100.0% |
| 5056971 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.64 | 45.0 | 4.93e-01 | 85.5% | 90.9% |
| 4933745 | 325.1.8.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 | 0.64 | 45.0 | 4.95e-01 | 85.5% | 92.7% |
| 4876624 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.63 | 46.0 | 4.93e-01 | 92.8% | 91.5% |
| 4403517 | 325.1.8.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 | 0.63 | 46.0 | 5.08e-01 | 85.5% | 98.2% |
| 5030051 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.63 | 46.0 | 4.86e-01 | 88.4% | 88.3% |
| 5042599 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.63 | 43.0 | 4.78e-01 | 85.5% | 90.9% |
| 3502131 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.62 | 46.0 | 5.10e-01 | 88.4% | 100.0% |
| 4946967 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.62 | 46.0 | 5.03e-01 | 82.6% | 98.2% |
| 4990229 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.62 | 31.0 | 3.23e-01 | 82.6% | 50.8% |
| 5032279 | 325.1.8.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 | 0.61 | 41.0 | 4.67e-01 | 78.3% | 96.0% |
| 1866329 | 325.1.8.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N | 0.61 | 49.0 | 5.14e-01 | 91.3% | 96.8% |
| 4977606 | 325.1.8.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 | 0.61 | 42.0 | 4.58e-01 | 79.7% | 89.1% |
| 5024283 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.61 | 45.0 | 4.88e-01 | 82.6% | 98.2% |
| 3940651 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.61 | 45.0 | 4.98e-01 | 85.5% | 100.0% |
| 3179525 | 325.1.8.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N | 0.60 | 45.0 | 4.52e-01 | 79.7% | 100.0% |
| 5067765 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.60 | 44.0 | 4.79e-01 | 84.1% | 98.2% |
| 3471930 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.60 | 43.0 | 4.56e-01 | 82.6% | 88.3% |
| 3533128 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.60 | 44.0 | 3.83e-01 | 79.7% | 80.0% |
| 4943889 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.59 | 41.0 | 4.64e-01 | 76.8% | 100.0% |
| 3385870 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.59 | 42.0 | 4.09e-01 | 76.8% | 69.3% |
| 3479881 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.58 | 47.0 | 3.97e-01 | 88.4% | 71.7% |
| 3994706 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.58 | 47.0 | 4.89e-01 | 92.8% | 98.5% |
| 4915323 | 1043.1.1.3 ↗ | beta complex topology › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › CoV_S2 | 0.56 | 34.0 | 2.79e-01 | 75.4% | 31.3% |
| 4367278 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.55 | 45.0 | 4.55e-01 | 92.8% | 88.6% |
| 4015851 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 39.0 | 3.04e-01 | 75.4% | 71.2% |
| 3831912 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.54 | 48.0 | 3.95e-01 | 98.6% | 83.2% |
| 3421279 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 41.0 | 3.31e-01 | 87.0% | 80.4% |
| 4466003 | 376.1.3.44 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva | 0.53 | 37.0 | 3.82e-01 | 72.5% | 86.2% |
| 4114778 | 2004.1.1.525 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_27, SbcC_Walker_B | 0.52 | 41.0 | 2.52e-01 | 92.8% | 65.4% |