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MH729379.1__AXY81189.1__AVP_73__00073
Bact-VirMH729379.1__AXY81189.1__AVP_73__00073
Identity
- Accession:
- MH729379 ↗
- Kingdom:
- phage
Quality
56.7
mean pLDDT
Taxonomy
TaxID: 2495576
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 303-364
Domain cluster:
rep: NC_025440.1__YP_010843779.1__PI27_gp212__00212__D243-304
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.75 | 51.0 | 5.13e-01 | 71.0% | 95.2% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.73 | 52.0 | 4.87e-01 | 75.8% | 70.5% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.71 | 49.0 | 3.94e-01 | 71.0% | 76.1% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.70 | 61.0 | 5.06e-01 | 98.4% | 80.7% |
| 4dhiB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.68 | 57.0 | 4.47e-01 | 100.0% | 57.9% |
| 3d1uA03 | 1.20.1270.240 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 56.0 | 4.83e-01 | 93.5% | 61.4% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.66 | 58.0 | 5.06e-01 | 100.0% | 88.5% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.65 | 55.0 | 4.46e-01 | 98.4% | 82.4% |
| 3crmA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.65 | 49.0 | 4.44e-01 | 82.3% | 83.3% |
| 2qgnA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.64 | 48.0 | 4.41e-01 | 82.3% | 82.9% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.63 | 47.0 | 4.14e-01 | 80.6% | 86.2% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.63 | 42.0 | 4.28e-01 | 80.6% | 71.7% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.62 | 51.0 | 4.45e-01 | 91.9% | 80.4% |
| 6q9jB02 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.62 | 49.0 | 4.50e-01 | 91.9% | 81.8% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.62 | 47.0 | 4.70e-01 | 82.3% | 90.5% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 53.0 | 4.91e-01 | 100.0% | 94.0% |
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.62 | 52.0 | 4.28e-01 | 100.0% | 71.4% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 51.0 | 4.14e-01 | 95.2% | 69.5% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 47.0 | 3.15e-01 | 85.5% | 23.2% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 47.0 | 4.49e-01 | 100.0% | 88.9% |
| 1sxjD03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 45.0 | 4.08e-01 | 87.1% | 67.0% |
| 3t9oB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.58 | 48.0 | 3.96e-01 | 95.2% | 82.5% |
| 5xnyA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.58 | 47.0 | 4.01e-01 | 93.5% | 77.6% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.57 | 46.0 | 4.60e-01 | 98.4% | 95.5% |
| 4c1uA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 45.0 | 3.12e-01 | 87.1% | 56.4% |
| 3gn4A00 | 6.10.220.10 | Special › Helix non-globular › Helical scaffold and wing domains of SecA › | 0.56 | 47.0 | 3.80e-01 | 96.8% | 48.1% |
| 2j0wA02 | 1.20.120.1320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain | 0.56 | 46.0 | 4.17e-01 | 98.4% | 83.9% |
| 4jgwA02 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.56 | 44.0 | 3.12e-01 | 95.2% | 85.0% |
| 4r2bA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 44.0 | 3.11e-01 | 88.7% | 55.6% |
| 4u2vA02 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.55 | 37.0 | 3.47e-01 | 71.0% | 56.2% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.54 | 45.0 | 3.73e-01 | 100.0% | 61.3% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 40.0 | 3.83e-01 | 85.5% | 87.0% |
| 4aq4A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 46.0 | 3.23e-01 | 100.0% | 62.5% |
| 2zj2A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 3.34e-01 | 72.6% | 58.3% |
| 2w96A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 43.0 | 3.69e-01 | 96.8% | 71.7% |
| 1hw1A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.53 | 45.0 | 3.47e-01 | 100.0% | 53.0% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 42.0 | 3.86e-01 | 96.8% | 85.7% |
| 2hyjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 38.0 | 3.02e-01 | 85.5% | 72.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3199450 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.73 | 51.0 | 3.33e-01 | 74.2% | 32.6% |
| 4467337 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.73 | 50.0 | 3.85e-01 | 72.6% | 33.6% |
| 5046473 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.72 | 58.0 | 5.20e-01 | 100.0% | 63.3% |
| 3971758 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.70 | 49.0 | 4.38e-01 | 74.2% | 52.9% |
| 3222373 | 605.4.1.18 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF29357 | 0.70 | 58.0 | 5.34e-01 | 98.4% | 90.6% |
| 4006721 | 325.1.7.50 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25876 | 0.69 | 50.0 | 4.47e-01 | 75.8% | 55.3% |
| 3781388 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.69 | 58.0 | 5.46e-01 | 93.5% | 86.7% |
| 3810674 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.68 | 58.0 | 4.77e-01 | 96.8% | 80.9% |
| 3386973 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.67 | 48.0 | 4.29e-01 | 75.8% | 52.2% |
| 4020054 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.66 | 58.0 | 5.26e-01 | 100.0% | 72.9% |
| 3503770 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.63 | 54.0 | 4.21e-01 | 100.0% | 89.7% |
| 4630813 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.62 | 54.0 | 4.56e-01 | 100.0% | 76.4% |
| 4146104 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.62 | 52.0 | 4.79e-01 | 100.0% | 76.5% |
| 3286065 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.62 | 53.0 | 5.16e-01 | 100.0% | 92.9% |
| 4042010 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.62 | 52.0 | 4.96e-01 | 100.0% | 86.7% |
| 1874545 | 139.4.1.0 ↗ | few secondary structure elements › Multiheme cytochromes › Outer membrane cytochrome MtrF › Outer membrane cytochrome MtrF | 0.62 | 51.0 | 2.99e-01 | 98.4% | 12.1% |
| 3388736 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.61 | 53.0 | 4.15e-01 | 100.0% | 85.7% |
| 4981747 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.61 | 50.0 | 4.98e-01 | 100.0% | 98.5% |
| 5044069 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 53.0 | 4.96e-01 | 100.0% | 87.5% |
| 3710934 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.61 | 51.0 | 4.60e-01 | 96.8% | 80.0% |
| 3373080 | 109.4.1.1854 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28619, PF28652, PF28655 | 0.60 | 49.0 | 2.99e-01 | 96.8% | 23.6% |
| 4019091 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.60 | 51.0 | 4.04e-01 | 100.0% | 61.4% |
| 4041623 | 632.2.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › FIVAR | 0.60 | 49.0 | 4.74e-01 | 100.0% | 88.0% |
| 5024220 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.58 | 48.0 | 4.20e-01 | 100.0% | 75.2% |
| 4999265 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.58 | 45.0 | 4.30e-01 | 93.5% | 76.2% |
| 3386333 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.57 | 48.0 | 4.59e-01 | 100.0% | 80.0% |
| 5002884 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.57 | 45.0 | 4.24e-01 | 91.9% | 86.3% |
| 3969007 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.54 | 46.0 | 4.07e-01 | 95.2% | 65.6% |