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MH729379.1__AXY81203.1__AVP_87__00087
Bact-VirMH729379.1__AXY81203.1__AVP_87__00087
Identity
- Accession:
- MH729379 ↗
- Kingdom:
- phage
Quality
94.3
mean pLDDT
Taxonomy
TaxID: 2495576
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-77
Domain cluster:
rep: AY855346.1__AAZ32271.1__X__00024__D138-192
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00877.26 best | NLPC_P60 | 24.2 | 3.70e-05 | 77.9% | 35.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2evrA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.87 | 64.0 | 5.05e-01 | 100.0% | 39.9% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.87 | 63.0 | 5.22e-01 | 100.0% | 46.0% |
| 6biqC01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.86 | 62.0 | 5.25e-01 | 100.0% | 47.9% |
| 4fdyA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.84 | 62.0 | 5.03e-01 | 100.0% | 44.0% |
| 2p1gA01 | 1.10.3670.10 | Mainly Alpha › Orthogonal Bundle › Putative xylanase fold › Putative xylanase like domain | 0.63 | 53.0 | 4.48e-01 | 93.5% | 73.6% |
| 2im9A01 | 1.10.3670.10 | Mainly Alpha › Orthogonal Bundle › Putative xylanase fold › Putative xylanase like domain | 0.58 | 51.0 | 4.41e-01 | 96.1% | 79.3% |
| 4v19F00 | 3.40.1370.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L4; Chain: A; › Ribosomal protein L4/L1 | 0.52 | 44.0 | 3.09e-01 | 94.8% | 95.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4477674 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.78 | 70.0 | 5.31e-01 | 100.0% | 44.8% |
| 5033151 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.74 | 68.0 | 5.19e-01 | 100.0% | 51.2% |
| 5063011 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.73 | 67.0 | 4.88e-01 | 100.0% | 46.5% |
| 3979552 | 219.1.1.90 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF1287 | 0.70 | 62.0 | 4.77e-01 | 100.0% | 58.3% |
| 3969508 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.70 | 63.0 | 4.82e-01 | 100.0% | 60.0% |
| 5021450 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.56 | 46.0 | 3.58e-01 | 94.8% | 76.3% |
D2
medium
residues 78-147
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gt2A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.80 | 61.0 | 4.80e-01 | 100.0% | 41.5% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.79 | 70.0 | 5.62e-01 | 100.0% | 52.4% |
| 2evrA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.76 | 70.0 | 5.37e-01 | 100.0% | 48.6% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.75 | 70.0 | 5.18e-01 | 100.0% | 47.2% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 44.0 | 4.96e-01 | 95.7% | 100.0% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 43.0 | 4.77e-01 | 92.9% | 100.0% |
| 1fviA01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 44.0 | 4.29e-01 | 100.0% | 67.1% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 52.0 | 3.83e-01 | 100.0% | 56.0% |
| 3ci6B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 41.0 | 3.19e-01 | 71.4% | 70.9% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 43.0 | 4.07e-01 | 91.4% | 64.7% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.58 | 43.0 | 3.15e-01 | 80.0% | 64.9% |
| 1ay9A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.57 | 42.0 | 3.72e-01 | 100.0% | 52.8% |
| 5aq0B00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.56 | 38.0 | 3.67e-01 | 94.3% | 61.0% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.55 | 48.0 | 4.40e-01 | 97.1% | 92.6% |
| 1y0gA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.55 | 43.0 | 3.39e-01 | 90.0% | 95.9% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 44.0 | 3.96e-01 | 94.3% | 96.3% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.54 | 47.0 | 4.65e-01 | 100.0% | 100.0% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 43.0 | 3.89e-01 | 94.3% | 97.1% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 48.0 | 4.29e-01 | 100.0% | 95.9% |
| 6dgiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 41.0 | 3.40e-01 | 90.0% | 73.6% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 38.0 | 2.77e-01 | 80.0% | 31.7% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 42.0 | 3.26e-01 | 90.0% | 60.2% |
| 3nqkA02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.52 | 40.0 | 3.22e-01 | 88.6% | 100.0% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 43.0 | 4.21e-01 | 98.6% | 95.1% |
| 3fyfA00 | 2.40.128.410 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 43.0 | 3.49e-01 | 100.0% | 83.9% |
| 2lc4A00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 38.0 | 3.36e-01 | 84.3% | 74.8% |
| 1oo0A00 | 3.30.1560.10 | Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi | 0.50 | 39.0 | 3.17e-01 | 87.1% | 65.3% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 39.0 | 3.49e-01 | 85.7% | 88.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287024 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.87 | 66.0 | 5.26e-01 | 100.0% | 43.1% |
| 3959495 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.82 | 64.0 | 6.22e-01 | 100.0% | 74.4% |
| 3960144 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.80 | 52.0 | 5.14e-01 | 88.6% | 62.7% |
| 161350 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.76 | 70.0 | 5.36e-01 | 100.0% | 48.3% |
| 3341084 | 219.1.1.25 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT | 0.69 | 57.0 | 5.03e-01 | 90.0% | 100.0% |
| 5043091 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.66 | 51.0 | 5.21e-01 | 94.3% | 85.3% |
| 4938120 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.64 | 49.0 | 4.98e-01 | 94.3% | 82.9% |
| 4952854 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.63 | 47.0 | 4.86e-01 | 91.4% | 86.2% |
| 5024805 | 4.2.1.3 ↗ | beta barrels › SH3 › SAND › SAND › RAMA | 0.63 | 53.0 | 5.09e-01 | 92.9% | 81.2% |
| 3978012 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.62 | 41.0 | 3.77e-01 | 94.3% | 52.2% |
| 5017848 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.62 | 48.0 | 4.90e-01 | 94.3% | 84.3% |
| 4403216 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.60 | 47.0 | 4.71e-01 | 100.0% | 84.3% |
| 3956333 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.60 | 43.0 | 3.59e-01 | 100.0% | 41.5% |
| 3264808 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.60 | 48.0 | 4.81e-01 | 100.0% | 87.1% |
| 3181766 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.60 | 47.0 | 4.62e-01 | 100.0% | 80.0% |
| 5029643 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.59 | 50.0 | 4.81e-01 | 94.3% | 83.7% |
| 3358753 | 4.1.1.381 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 | 0.59 | 46.0 | 3.57e-01 | 100.0% | 37.0% |
| 4024915 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.59 | 46.0 | 4.78e-01 | 100.0% | 93.8% |
| 3296865 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.58 | 46.0 | 4.08e-01 | 100.0% | 58.1% |
| 5005032 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.58 | 45.0 | 4.53e-01 | 94.3% | 85.7% |
| 5055961 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.58 | 49.0 | 4.70e-01 | 94.3% | 87.5% |
| 4882197 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.57 | 49.0 | 4.21e-01 | 100.0% | 65.3% |
| 3981575 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 38.0 | 4.13e-01 | 85.7% | 94.5% |
| 3941170 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.55 | 45.0 | 4.58e-01 | 95.7% | 92.9% |
| 3627859 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.54 | 46.0 | 4.56e-01 | 98.6% | 89.3% |
| 3240407 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.54 | 45.0 | 4.58e-01 | 97.1% | 94.3% |
| 3924375 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.54 | 46.0 | 4.52e-01 | 98.6% | 89.3% |
| 3936347 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.53 | 41.0 | 3.11e-01 | 87.1% | 51.1% |
| 5081903 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.53 | 37.0 | 3.57e-01 | 94.3% | 63.7% |
| 3302829 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.53 | 40.0 | 4.13e-01 | 100.0% | 92.3% |
| 4018792 | 206.1.2.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin | 0.53 | 39.0 | 2.60e-01 | 81.4% | 62.5% |
| 3248403 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 40.0 | 3.27e-01 | 82.9% | 79.3% |
| 4488977 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.52 | 40.0 | 3.30e-01 | 85.7% | 60.0% |