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MH729379.1__AXY81212.1__AVP_96__00096
Bact-VirMH729379.1__AXY81212.1__AVP_96__00096
Identity
- Accession:
- MH729379 ↗
- Kingdom:
- phage
Quality
74.8
mean pLDDT
Taxonomy
TaxID: 2495576
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-204
Domain cluster:
rep: NC_041875.1__YP_009594310.1__FDG92_gp21__00021__D5-180
D2
high
residues 231-272
Domain cluster:
rep: IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452__D259-301
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 67.1 | 1.40e-18 | 97.6% | 95.3% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8vA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.97 | 90.0 | 7.48e-01 | 100.0% | 64.2% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.94 | 86.0 | 8.35e-01 | 100.0% | 93.5% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.90 | 81.0 | 6.66e-01 | 100.0% | 60.3% |
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.86 | 75.0 | 7.20e-01 | 100.0% | 87.8% |
| 1e0gA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.80 | 69.0 | 6.61e-01 | 100.0% | 85.4% |
| 2mkxA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.80 | 68.0 | 6.44e-01 | 100.0% | 82.4% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.80 | 67.0 | 6.44e-01 | 100.0% | 84.0% |
| 2djpA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.79 | 69.0 | 5.67e-01 | 100.0% | 57.1% |
| 4b43A01 | 1.10.10.2480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.74 | 58.0 | 5.05e-01 | 90.5% | 73.5% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 64.0 | 5.00e-01 | 100.0% | 53.4% |
| 3mklA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 59.0 | 4.42e-01 | 92.9% | 47.1% |
| 6xiuA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 59.0 | 4.48e-01 | 92.9% | 48.5% |
| 3lsgA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 55.0 | 5.15e-01 | 90.5% | 94.5% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 47.0 | 4.22e-01 | 71.4% | 56.7% |
| 1wi9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 4.92e-01 | 90.5% | 91.4% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 57.0 | 3.73e-01 | 95.2% | 26.3% |
| 3colB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 57.0 | 3.78e-01 | 97.6% | 28.2% |
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 53.0 | 4.77e-01 | 92.9% | 93.8% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.67 | 55.0 | 3.84e-01 | 90.5% | 36.9% |
| 3wrbB02 | 1.10.700.10 | Mainly Alpha › Orthogonal Bundle › Protocatechuate 4,5-dioxygenase; Chain A › Dioxygenase LigAB, LigA subunit | 0.65 | 44.0 | 3.39e-01 | 71.4% | 37.4% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 53.0 | 4.92e-01 | 95.2% | 89.3% |
| 2zcxA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 54.0 | 3.48e-01 | 97.6% | 23.9% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 53.0 | 3.52e-01 | 97.6% | 22.3% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 54.0 | 4.54e-01 | 95.2% | 69.4% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 4.86e-01 | 97.6% | 87.2% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 50.0 | 4.16e-01 | 88.1% | 67.1% |
| 2nx4C00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 51.0 | 3.40e-01 | 97.6% | 24.6% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 3.94e-01 | 95.2% | 57.7% |
| 3edpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 4.11e-01 | 90.5% | 73.7% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 51.0 | 4.11e-01 | 100.0% | 51.6% |
| 6l9iA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 43.0 | 2.83e-01 | 95.2% | 17.2% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.61 | 46.0 | 3.66e-01 | 83.3% | 58.2% |
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 48.0 | 4.12e-01 | 95.2% | 69.1% |
| 2bdvA00 | 3.90.1680.10 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like | 0.51 | 37.0 | 2.42e-01 | 95.2% | 16.4% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 1.00 | 95.0 | 7.71e-01 | 100.0% | 60.0% |
| 4249176 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 1.00 | 95.0 | 8.15e-01 | 100.0% | 70.0% |
| 4448562 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 1.00 | 94.0 | 8.44e-01 | 100.0% | 76.4% |
| 2035755 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 94.0 | 6.82e-01 | 100.0% | 42.4% |
| 4205026 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 94.0 | 7.83e-01 | 100.0% | 64.6% |
| 3974521 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 94.0 | 8.07e-01 | 100.0% | 70.0% |
| 3963287 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 89.0 | 9.13e-01 | 95.2% | 100.0% |
| 3165071 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 93.0 | 8.32e-01 | 100.0% | 76.4% |
| 4404011 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 93.0 | 7.56e-01 | 100.0% | 60.0% |
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 92.0 | 9.01e-01 | 100.0% | 93.3% |
| 4461167 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 92.0 | 7.75e-01 | 100.0% | 64.6% |
| 4680476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 92.0 | 7.53e-01 | 100.0% | 61.4% |
| 3985839 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 92.0 | 7.51e-01 | 100.0% | 60.0% |
| 3501971 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 91.0 | 7.92e-01 | 100.0% | 70.0% |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.97 | 91.0 | 5.26e-01 | 100.0% | 14.3% |
| 3337328 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.97 | 90.0 | 5.27e-01 | 100.0% | 14.8% |
| 3452845 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.97 | 90.0 | 8.12e-01 | 100.0% | 76.4% |
| 2124476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.97 | 90.0 | 6.02e-01 | 100.0% | 31.9% |
| 3464064 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 89.0 | 6.86e-01 | 100.0% | 49.4% |
| 3655335 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 89.0 | 5.73e-01 | 100.0% | 25.5% |
| 3898121 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 89.0 | 8.03e-01 | 100.0% | 76.4% |
| 3981327 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 89.0 | 8.08e-01 | 100.0% | 79.6% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 88.0 | 5.11e-01 | 100.0% | 14.8% |
| 3458171 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 88.0 | 7.43e-01 | 100.0% | 66.2% |
| 2124917 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 88.0 | 5.67e-01 | 100.0% | 26.7% |
| 3417561 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 87.0 | 5.09e-01 | 100.0% | 14.6% |
| 4157099 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 88.0 | 8.37e-01 | 100.0% | 89.6% |
| 3337080 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.95 | 87.0 | 7.58e-01 | 100.0% | 71.7% |
| 3303205 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 87.0 | 7.63e-01 | 100.0% | 75.0% |
| 2047861 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 87.0 | 7.69e-01 | 100.0% | 74.1% |
| 3324708 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 87.0 | 7.58e-01 | 100.0% | 71.7% |
| 3190144 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 85.0 | 8.10e-01 | 100.0% | 87.8% |
| 4118675 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 85.0 | 8.35e-01 | 100.0% | 93.3% |
| 3426433 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 86.0 | 7.52e-01 | 100.0% | 71.7% |
| 3636417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.94 | 86.0 | 7.87e-01 | 100.0% | 84.9% |
| 4137479 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 85.0 | 6.57e-01 | 100.0% | 50.6% |
| 2074716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 86.0 | 7.96e-01 | 100.0% | 84.3% |
| 3165082 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 85.0 | 7.96e-01 | 100.0% | 86.0% |
| 3349612 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.93 | 83.0 | 7.81e-01 | 100.0% | 82.0% |
| 3821115 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.92 | 83.0 | 6.48e-01 | 100.0% | 51.8% |
| 3636424 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 84.0 | 7.61e-01 | 100.0% | 81.8% |
| 4023232 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.92 | 84.0 | 7.36e-01 | 100.0% | 75.0% |
| 3234671 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 85.0 | 7.64e-01 | 100.0% | 78.2% |
| 4277578 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 84.0 | 7.86e-01 | 100.0% | 86.0% |
| 1758716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 83.0 | 7.70e-01 | 100.0% | 82.7% |
| 3456918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 84.0 | 6.19e-01 | 100.0% | 43.0% |
| 4022922 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 83.0 | 7.54e-01 | 100.0% | 78.2% |
| 3413357 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 84.0 | 6.93e-01 | 100.0% | 61.4% |
| 3903953 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 81.0 | 7.60e-01 | 100.0% | 82.0% |
| 4491522 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 82.0 | 7.21e-01 | 100.0% | 71.7% |
| 3331840 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 83.0 | 7.54e-01 | 100.0% | 78.2% |
| 3191020 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 82.0 | 7.18e-01 | 100.0% | 78.3% |
| 4216124 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 81.0 | 7.98e-01 | 100.0% | 95.6% |
| 3641672 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.90 | 81.0 | 6.59e-01 | 100.0% | 57.3% |
| 3846469 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 82.0 | 6.24e-01 | 100.0% | 47.8% |
| 3517460 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 82.0 | 7.40e-01 | 100.0% | 78.2% |
| 3925474 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 81.0 | 7.66e-01 | 100.0% | 86.0% |
| 3691758 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.90 | 81.0 | 7.39e-01 | 100.0% | 81.8% |
| 3367888 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.90 | 80.0 | 6.71e-01 | 100.0% | 68.6% |
| 4149501 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 81.0 | 7.62e-01 | 100.0% | 86.0% |
| 3320955 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.90 | 80.0 | 6.87e-01 | 100.0% | 66.2% |
| 3230171 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 81.0 | 7.63e-01 | 100.0% | 86.0% |
| 4662825 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 80.0 | 6.88e-01 | 100.0% | 69.2% |
| 3250641 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 80.0 | 7.57e-01 | 100.0% | 84.0% |
| 3964929 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 80.0 | 7.82e-01 | 100.0% | 93.3% |
| 3810505 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 79.0 | 5.20e-01 | 100.0% | 26.1% |
| 3248434 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 78.0 | 7.50e-01 | 100.0% | 91.8% |
| 3964920 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 78.0 | 6.95e-01 | 100.0% | 70.7% |
| 3181142 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 78.0 | 7.39e-01 | 97.6% | 94.0% |
| 3232962 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 80.0 | 7.02e-01 | 100.0% | 71.7% |
| 3413453 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 80.0 | 7.53e-01 | 100.0% | 86.0% |
| 3190345 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 79.0 | 7.22e-01 | 100.0% | 80.0% |
| 3185732 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 77.0 | 7.06e-01 | 100.0% | 89.1% |
| 3946658 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 78.0 | 6.55e-01 | 100.0% | 62.9% |
| 3691772 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 77.0 | 7.06e-01 | 100.0% | 78.2% |
| 4492966 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 77.0 | 7.05e-01 | 100.0% | 78.2% |
| 3338947 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.87 | 77.0 | 6.65e-01 | 100.0% | 67.7% |
| 3186054 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 78.0 | 7.39e-01 | 100.0% | 84.0% |
| 3989756 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 75.0 | 7.24e-01 | 100.0% | 95.8% |
| 3182365 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.86 | 76.0 | 7.03e-01 | 100.0% | 81.1% |
| 2042916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 75.0 | 6.97e-01 | 100.0% | 79.6% |
| 3240624 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 76.0 | 6.95e-01 | 100.0% | 78.2% |
| 3698670 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 75.0 | 6.62e-01 | 100.0% | 68.3% |
| 4468802 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.86 | 76.0 | 6.15e-01 | 100.0% | 54.4% |
| 3720941 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.86 | 64.0 | 6.84e-01 | 81.0% | 97.1% |
| 1759182 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 74.0 | 7.02e-01 | 100.0% | 84.3% |
| 4128043 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 75.0 | 7.36e-01 | 100.0% | 95.6% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 74.0 | 7.01e-01 | 100.0% | 86.0% |
| 3598919 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.84 | 71.0 | 4.41e-01 | 100.0% | 17.1% |
| 3604763 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.84 | 72.0 | 5.72e-01 | 100.0% | 48.2% |
| 3306283 | 101.15.1.8 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_NFP | 0.84 | 73.0 | 6.35e-01 | 100.0% | 66.2% |
| 3240617 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.81 | 69.0 | 6.25e-01 | 100.0% | 78.3% |
| 4228237 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.78 | 60.0 | 5.77e-01 | 88.1% | 96.0% |
| 4460243 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.76 | 60.0 | 5.57e-01 | 90.5% | 90.9% |
| 4100484 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.74 | 59.0 | 5.42e-01 | 90.5% | 90.9% |
| 4251581 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.74 | 59.0 | 5.14e-01 | 90.5% | 76.9% |
| 4292036 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.73 | 61.0 | 5.53e-01 | 97.6% | 88.3% |
| 4886263 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.73 | 58.0 | 5.41e-01 | 90.5% | 90.9% |
| 4456842 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.72 | 57.0 | 5.14e-01 | 90.5% | 81.7% |
| 4100614 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.72 | 58.0 | 5.34e-01 | 90.5% | 83.6% |
D3
medium
residues 308-371
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 51.0 | 5.67e-01 | 100.0% | 86.3% |
| 4epcA01 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 69.0 | 6.36e-01 | 100.0% | 80.2% |
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 58.0 | 6.21e-01 | 100.0% | 96.3% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.73 | 51.0 | 5.77e-01 | 98.4% | 100.0% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 52.0 | 5.02e-01 | 100.0% | 67.6% |
| 8b2gA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 60.0 | 6.19e-01 | 92.2% | 100.0% |
| 2krsA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 57.0 | 5.93e-01 | 96.9% | 96.7% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 55.0 | 5.51e-01 | 100.0% | 84.4% |
| 1udlA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 53.0 | 4.60e-01 | 100.0% | 54.1% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 53.0 | 5.54e-01 | 100.0% | 91.5% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 56.0 | 5.49e-01 | 100.0% | 85.7% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 58.0 | 4.92e-01 | 98.4% | 99.0% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 39.0 | 3.90e-01 | 100.0% | 56.5% |
| 1dj7B00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 58.0 | 5.53e-01 | 100.0% | 91.8% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.60 | 44.0 | 4.60e-01 | 95.3% | 89.3% |
| 1jb0E00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 53.0 | 5.19e-01 | 100.0% | 89.9% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.56 | 40.0 | 4.00e-01 | 98.4% | 76.6% |
| 2ls0101 | 2.40.50.670 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme | 0.56 | 45.0 | 3.88e-01 | 95.3% | 93.0% |
| 2nysA00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.54 | 48.0 | 3.95e-01 | 100.0% | 67.5% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.54 | 37.0 | 3.96e-01 | 98.4% | 94.1% |
| 1njhA00 | 2.70.180.10 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF | 0.51 | 44.0 | 3.79e-01 | 100.0% | 75.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4063512 | 4.1.1.86 ↗ | beta barrels › SH3 › SH3 › SH3 › GW | 0.78 | 71.0 | 6.75e-01 | 100.0% | 88.0% |
| 3972820 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 70.0 | 6.47e-01 | 100.0% | 80.0% |
| 4386715 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.75 | 67.0 | 6.08e-01 | 100.0% | 85.9% |
| 4303967 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 65.0 | 5.84e-01 | 100.0% | 87.8% |
| 4602101 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.73 | 62.0 | 6.18e-01 | 100.0% | 90.8% |
| 3701345 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 66.0 | 6.12e-01 | 100.0% | 83.7% |
| 4013287 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 60.0 | 6.23e-01 | 93.8% | 100.0% |
| 4038705 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.72 | 62.0 | 6.23e-01 | 100.0% | 93.8% |
| 540 | 4.1.1.8 ↗ | beta barrels › SH3 › SH3 › SH3 › IN_DBD_C | 0.71 | 47.0 | 5.32e-01 | 100.0% | 91.7% |
| 3204891 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 63.0 | 6.01e-01 | 100.0% | 94.7% |
| 4009391 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 62.0 | 5.81e-01 | 100.0% | 78.8% |
| 4196229 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.71 | 60.0 | 5.88e-01 | 100.0% | 85.7% |
| 3592766 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 62.0 | 4.82e-01 | 100.0% | 49.3% |
| 3700872 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 62.0 | 5.67e-01 | 100.0% | 81.2% |
| 4261760 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.69 | 61.0 | 5.39e-01 | 100.0% | 71.6% |
| 3707023 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 61.0 | 5.29e-01 | 100.0% | 75.0% |
| 2581331 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 61.0 | 5.85e-01 | 100.0% | 85.3% |
| 4207556 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.69 | 60.0 | 5.89e-01 | 100.0% | 94.3% |
| 4427420 | 4.1.1.436 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29249 | 0.69 | 60.0 | 5.64e-01 | 100.0% | 78.8% |
| 4550532 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.68 | 58.0 | 5.17e-01 | 100.0% | 67.8% |
| 3470815 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.67 | 56.0 | 5.47e-01 | 100.0% | 84.3% |
| 3471318 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 44.0 | 3.82e-01 | 95.3% | 45.0% |
| 3978088 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 53.0 | 5.27e-01 | 100.0% | 89.2% |
| 4043121 | 4.1.1.36 ↗ | beta barrels › SH3 › SH3 › SH3 › FeThRed_A | 0.64 | 59.0 | 5.60e-01 | 100.0% | 91.8% |
| 4376886 | 4.1.1.241 ↗ | beta barrels › SH3 › SH3 › SH3 › NifZ | 0.63 | 53.0 | 5.03e-01 | 100.0% | 82.5% |
| 5039349 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 4.98e-01 | 100.0% | 98.3% |
| 3480204 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.60 | 48.0 | 4.81e-01 | 100.0% | 89.2% |
| 4138935 | 4.1.1.241 ↗ | beta barrels › SH3 › SH3 › SH3 › NifZ | 0.60 | 50.0 | 4.83e-01 | 100.0% | 86.7% |
| 4888491 | 4.1.1.73 ↗ | beta barrels › SH3 › SH3 › SH3 › Cul7 | 0.59 | 39.0 | 4.09e-01 | 90.6% | 77.2% |
| 3530890 | 2004.1.1.402 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT | 0.58 | 49.0 | 4.51e-01 | 100.0% | 83.0% |
| 3482677 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 44.0 | 4.31e-01 | 100.0% | 82.9% |
| 3477189 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.56 | 36.0 | 3.97e-01 | 96.9% | 93.3% |
| 5041849 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 38.0 | 4.03e-01 | 98.4% | 89.1% |
| 4405689 | 220.1.1.228 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PKH3_C | 0.54 | 44.0 | 3.50e-01 | 96.9% | 86.0% |
| 3903484 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.52 | 41.0 | 3.56e-01 | 92.2% | 75.5% |
| 5000722 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 44.0 | 3.61e-01 | 95.3% | 80.0% |
| 4680137 | 220.1.1.154 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 | 0.52 | 41.0 | 3.27e-01 | 95.3% | 54.4% |
| 145646 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.51 | 44.0 | 3.57e-01 | 100.0% | 60.9% |
| 4122746 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.51 | 43.0 | 3.58e-01 | 100.0% | 70.4% |
D4
medium
residues 378-419
Domain cluster:
rep: IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452__D259-301
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 55.8 | 4.90e-15 | 97.6% | 93.0% |