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MH729379.1__AXY81244.1__AVP_128__00128

Bact-Vir

MH729379.1__AXY81244.1__AVP_128__00128

Identity

Accession:
MH729379 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Aerococcus_phage_vB_AviM_AVP

TaxID: 2495576

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-171
PDB
Domain cluster: rep: MK016493.1__AYQ99350.1__PBI_CANTARE_130__00130__D75-228
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03167.26 best UDG 28.0 2.90e-06 84.5% 69.3%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ui0A00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.89 79.0 7.52e-01 98.2% 80.2%
6ajpA00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.85 78.0 7.23e-01 97.6% 78.2%
1mugA00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.76 67.0 6.76e-01 97.0% 93.3%
2c2pA01 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.74 65.0 6.55e-01 97.6% 91.8%
1wywA00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.74 69.0 6.31e-01 99.4% 79.2%
3s7zA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 45.0 5.11e-01 97.6% 95.2%
3ujpA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.65 42.0 4.95e-01 95.8% 94.8%
4rxmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 44.0 4.91e-01 100.0% 91.5%
3pdiA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.63 46.0 4.77e-01 100.0% 81.8%
3c3kB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 44.0 4.89e-01 100.0% 91.0%
2hqbA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 42.0 4.74e-01 100.0% 88.5%
4ry8A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 43.0 4.52e-01 100.0% 81.1%
3lp8A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 33.0 4.33e-01 79.2% 96.7%
5hsgA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 42.0 4.71e-01 100.0% 94.4%
4xxhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 43.0 4.67e-01 100.0% 89.1%
2pn1A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 36.0 4.17e-01 83.9% 81.3%
3ajaB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 52.0 4.54e-01 98.2% 97.0%
1gqiA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.58 39.0 4.35e-01 100.0% 86.3%
4ldaB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 40.0 4.50e-01 98.8% 94.5%
3tb6B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 42.0 4.45e-01 98.2% 87.0%
3mixA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.56 32.0 3.74e-01 98.2% 77.5%
4q6bA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 36.0 3.90e-01 91.7% 79.9%
3lubA01 3.40.50.10310 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase 0.55 49.0 4.42e-01 99.4% 95.4%
1ewqA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.54 33.0 3.86e-01 94.6% 84.7%
4nesA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 48.0 4.58e-01 95.2% 100.0%
1ptmA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 49.0 3.91e-01 98.2% 98.5%
7c2xA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 50.0 4.18e-01 99.4% 96.7%
2wabA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 48.0 4.47e-01 99.4% 98.1%
2vptA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 48.0 4.50e-01 97.0% 98.0%
3pdiA02 3.40.50.12380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase MoFe cofactor biosynthesis protein NifE, C-terminal 0.53 38.0 3.30e-01 100.0% 45.8%
4hwgA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 48.0 4.46e-01 100.0% 96.7%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 32.0 3.95e-01 79.8% 98.1%
2c20A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 46.0 4.39e-01 100.0% 95.6%
1jx6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 38.0 3.76e-01 100.0% 72.0%
4axvA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 45.0 4.04e-01 97.6% 80.5%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 44.0 3.60e-01 95.2% 86.5%
1a9yA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 45.0 4.22e-01 100.0% 96.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962559 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.90 78.0 7.49e-01 97.0% 81.1%
5021506 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.90 73.0 7.01e-01 95.2% 75.7%
3386994 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.89 72.0 7.11e-01 94.6% 79.4%
4943408 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.89 80.0 7.44e-01 98.8% 78.0%
4449291 7569.1.1.0 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like 0.89 60.0 5.79e-01 97.6% 62.5%
4318718 7569.1.1.0 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like 0.88 73.0 7.21e-01 94.6% 81.7%
4937539 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.88 74.0 7.19e-01 97.0% 78.9%
4990486 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.88 77.0 7.38e-01 96.4% 80.5%
4352085 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.88 79.0 7.41e-01 98.8% 79.0%
4968429 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.86 77.0 7.32e-01 99.4% 81.6%
3057088 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.85 78.0 7.11e-01 97.6% 74.9%
3590878 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.85 78.0 7.15e-01 95.8% 84.3%
3965875 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.85 67.0 6.92e-01 96.4% 85.6%
3839117 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.84 68.0 6.64e-01 97.0% 78.3%
4965816 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.79 73.0 6.80e-01 97.0% 81.0%
4964719 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.78 72.0 6.72e-01 99.4% 81.0%
4964088 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.76 68.0 6.53e-01 98.8% 83.7%
3287862 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.75 64.0 6.38e-01 94.6% 86.3%
4999526 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.75 61.0 5.87e-01 94.0% 75.3%
158456 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.74 65.0 6.36e-01 97.6% 85.2%
5066830 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.72 62.0 5.94e-01 96.4% 80.0%
3395458 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.70 64.0 5.58e-01 97.6% 78.8%
4051075 2498.2.1.2 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glyco_hydro_67N 0.63 40.0 4.49e-01 100.0% 80.8%
5031354 2007.1.5.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.63 42.0 4.76e-01 92.9% 89.8%
3290813 7579.1.1.11 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Cutinase 0.60 54.0 4.50e-01 99.4% 93.3%
5078716 2003.1.10.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › PylC-like_N 0.59 37.0 4.32e-01 79.2% 90.4%
4989087 2007.1.5.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.58 41.0 4.69e-01 94.6% 98.4%
3806126 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.57 45.0 4.30e-01 99.4% 69.5%
3478656 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 37.0 3.60e-01 96.4% 57.9%
4446545 7567.1.1.1 ↗ a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.57 52.0 4.28e-01 98.8% 97.3%
386382 7539.1.1.1 ↗ a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase 0.55 50.0 4.41e-01 100.0% 91.3%
3883517 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.55 50.0 4.54e-01 98.2% 94.6%
3638694 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.55 48.0 4.00e-01 95.2% 98.3%
3894910 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.55 50.0 3.90e-01 98.2% 95.7%
4588088 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 50.0 4.46e-01 98.8% 97.4%
3637489 2007.1.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race 0.54 41.0 4.41e-01 90.5% 95.0%
5081078 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.53 49.0 4.78e-01 100.0% 98.4%
4319336 7510.1.1.5 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PdxA 0.53 48.0 4.52e-01 99.4% 97.5%
4999389 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 48.0 4.57e-01 100.0% 96.4%
2628063 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.51 45.0 3.83e-01 97.0% 96.2%
3387860 7510.1.1.5 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PdxA 0.51 45.0 4.28e-01 95.2% 98.5%
3958656 2007.1.5.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.51 37.0 4.21e-01 82.7% 96.9%
4991830 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.51 38.0 3.67e-01 100.0% 66.3%
4890579 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.51 42.0 4.22e-01 90.5% 95.4%
3801844 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.51 43.0 3.70e-01 90.5% 92.3%
4998010 2002.3.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 0.50 45.0 3.77e-01 100.0% 87.5%
4937461 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.50 45.0 4.25e-01 99.4% 98.1%
4998914 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 46.0 4.21e-01 99.4% 99.5%
2603994 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 42.0 4.19e-01 90.5% 94.3%
D2 high residues 177-322_402-454
PDB
Domain cluster: rep: MK613348.1__QBQ72741.1__CRP6_gp17__00017__D2-169
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01612.27 best DNA_pol_A_exo1 50.7 2.70e-13 75.9% 76.9%
D3 high residues 692-745
PDB
Domain cluster: rep: KC699836.1__AGK86975.1__SIOphi_00835__00167__D38-90
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00476.27 best DNA_pol_A 37.0 2.70e-09 100.0% 13.9%
D4 medium residues 323-401
PDB
Domain cluster: rep: NC_030920.1__YP_009274823.1__BH780_gp116__00116__D408-485
D5 medium residues 455-532_608-671
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00476.27 best DNA_pol_A 40.5 2.40e-10 81.7% 13.4%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.69 34.0 4.90e-01 73.9% 98.6%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 28.0 3.67e-01 70.4% 67.5%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 26.0 3.13e-01 76.1% 66.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3595357 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.62 60.0 5.42e-01 100.0% 98.3%
4995739 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.62 58.0 5.48e-01 98.6% 98.2%
3277346 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.61 58.0 5.33e-01 100.0% 94.9%
5028533 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 29.0 3.07e-01 79.6% 50.0%
57665 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.59 57.0 5.17e-01 100.0% 83.1%
1503978 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.58 56.0 4.91e-01 100.0% 81.5%
3222805 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.56 40.0 3.31e-01 73.2% 95.2%
3598489 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.55 51.0 4.97e-01 100.0% 97.4%
5024782 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.54 31.0 2.93e-01 90.8% 45.7%
4024559 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.53 50.0 4.60e-01 100.0% 87.6%
4946656 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 29.0 3.17e-01 83.8% 63.3%
4015907 601.33.1.14 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Erg28 0.52 25.0 3.18e-01 71.1% 75.0%
D6 medium residues 533-607
PDB
Domain cluster: rep: KP687431.1__AKC02296.1__X__00089__D36-106
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vddA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.92 65.0 5.50e-01 100.0% 47.8%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 36.0 4.25e-01 98.7% 72.2%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 37.0 4.27e-01 72.0% 90.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689258 5001.1.1.80 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Dicty_CAR 0.54 41.0 2.85e-01 86.7% 89.3%
3926720 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.54 40.0 4.20e-01 80.0% 98.5%
4257906 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.51 44.0 4.18e-01 96.0% 85.6%