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MH729379.1__AXY81250.1__AVP_134__00134

Bact-Vir

MH729379.1__AXY81250.1__AVP_134__00134

Identity

Accession:
MH729379 ↗
Kingdom:
phage

Quality

67.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Aerococcus_phage_vB_AviM_AVP

TaxID: 2495576

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-71
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.72 52.0 3.76e-01 76.5% 83.1%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.71 49.0 4.05e-01 72.1% 95.1%
7zoiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.71 49.0 4.04e-01 72.1% 99.2%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.70 50.0 3.97e-01 76.5% 99.3%
2fdbN00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 47.0 3.75e-01 77.9% 87.2%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.65 48.0 3.90e-01 82.4% 64.5%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 50.0 4.06e-01 88.2% 97.9%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 44.0 4.69e-01 77.9% 83.1%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 44.0 3.52e-01 75.0% 88.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.89e-01 92.6% 89.4%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.62 45.0 3.85e-01 100.0% 46.9%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 48.0 4.78e-01 94.1% 81.9%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 41.0 4.49e-01 76.5% 88.9%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.61 40.0 3.97e-01 73.5% 63.9%
5bxrA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 46.0 3.66e-01 82.4% 94.3%
1faxA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 37.0 3.23e-01 75.0% 39.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.81e-01 95.6% 85.5%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.65e-01 89.7% 45.2%
1h12A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 42.0 2.64e-01 75.0% 22.5%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 45.0 4.03e-01 79.4% 95.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.46e-01 100.0% 76.7%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 43.0 3.90e-01 77.9% 97.9%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.59 48.0 4.39e-01 92.6% 81.7%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 43.0 4.07e-01 76.5% 72.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 38.0 4.25e-01 75.0% 88.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.42e-01 100.0% 82.8%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 50.0 3.32e-01 100.0% 29.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.75e-01 100.0% 98.2%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 45.0 3.71e-01 83.8% 90.2%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.58 44.0 3.03e-01 82.4% 50.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 37.0 4.26e-01 77.9% 93.8%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.42e-01 79.4% 92.5%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 48.0 4.64e-01 98.5% 100.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.30e-01 77.9% 89.4%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 40.0 3.98e-01 75.0% 100.0%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.46e-01 89.7% 50.5%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 4.08e-01 100.0% 96.3%
4cj0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 48.0 4.35e-01 100.0% 83.2%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.55 39.0 4.00e-01 75.0% 93.8%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.59e-01 89.7% 59.0%
1v5rA00 3.30.920.20 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain 0.55 44.0 3.97e-01 91.2% 62.9%
1pzsA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.55 39.0 2.98e-01 76.5% 98.2%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 44.0 4.00e-01 95.6% 87.8%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.53 41.0 3.45e-01 89.7% 85.4%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.91e-01 94.1% 82.7%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 3.68e-01 75.0% 88.6%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.38e-01 100.0% 57.1%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.34e-01 91.2% 93.1%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.93e-01 92.6% 87.3%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 36.0 3.07e-01 77.9% 92.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.50 35.0 3.59e-01 75.0% 77.3%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.50 35.0 3.82e-01 94.1% 96.3%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.86e-01 100.0% 78.2%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3223830 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 53.0 6.00e-01 80.9% 98.0%
3328404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.65e-01 85.3% 96.2%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 48.0 5.32e-01 80.9% 90.9%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.08e-01 82.4% 82.3%
3574784 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 61.0 5.17e-01 100.0% 76.4%
3897826 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.67 48.0 4.08e-01 76.5% 66.1%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 54.0 5.32e-01 91.2% 88.0%
4995677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.23e-01 80.9% 94.5%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.66 46.0 5.19e-01 80.9% 96.2%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 44.0 5.04e-01 79.4% 96.0%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.45e-01 76.5% 65.0%
5035934 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 52.0 5.35e-01 92.6% 92.3%
3597224 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 50.0 4.18e-01 86.8% 76.8%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.18e-01 100.0% 47.2%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 45.0 4.75e-01 82.4% 83.3%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 41.0 4.68e-01 75.0% 90.0%
3721973 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 52.0 5.04e-01 91.2% 85.3%
5040230 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 50.0 5.10e-01 92.6% 90.8%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.63 47.0 4.13e-01 100.0% 54.0%
1884741 4.1.1.130 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_19 0.63 47.0 5.00e-01 97.1% 91.5%
3983510 219.1.1.152 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF26124 0.63 54.0 4.17e-01 100.0% 57.6%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.63 42.0 4.75e-01 79.4% 96.0%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.09e-01 86.8% 100.0%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 51.0 5.03e-01 92.6% 88.0%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 40.0 4.58e-01 75.0% 90.0%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 49.0 4.93e-01 91.2% 85.7%
5050226 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.61 54.0 4.81e-01 100.0% 77.0%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 41.0 3.84e-01 79.4% 55.3%
3934476 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 3.79e-01 83.8% 80.7%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.35e-01 77.9% 80.0%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.61 45.0 4.16e-01 82.4% 62.4%
3308604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 50.0 4.88e-01 92.6% 85.3%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 39.0 4.28e-01 77.9% 81.8%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.61 41.0 4.14e-01 77.9% 69.6%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 46.0 4.19e-01 100.0% 61.1%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.61 44.0 4.69e-01 92.6% 88.3%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.60 43.0 4.59e-01 95.6% 94.5%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 3.71e-01 88.2% 43.9%
4060574 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.60 51.0 5.00e-01 94.1% 86.7%
3339162 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.60 50.0 4.02e-01 91.2% 75.4%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 39.0 3.49e-01 79.4% 46.0%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 38.0 4.34e-01 75.0% 90.0%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 47.0 4.32e-01 100.0% 65.6%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.59 50.0 3.99e-01 91.2% 74.6%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.83e-01 100.0% 92.3%
3900017 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.59 44.0 3.72e-01 82.4% 47.5%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 48.0 4.81e-01 92.6% 90.0%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 3.27e-01 100.0% 32.3%
4679625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.15e-01 76.5% 80.0%
3818610 4.1.1.324 ↗ beta barrels › SH3 › SH3 › SH3 › Nodulin_C 0.58 53.0 4.72e-01 100.0% 100.0%
4253206 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.58 49.0 4.58e-01 100.0% 88.9%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.42e-01 76.5% 93.3%
3958137 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.54e-01 100.0% 88.9%
3796759 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.57 50.0 4.51e-01 100.0% 76.8%
3490071 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.57 44.0 3.10e-01 85.3% 62.6%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 43.0 4.04e-01 100.0% 65.9%
4029739 9.8.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.57 43.0 3.72e-01 86.8% 95.0%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 45.0 4.25e-01 98.5% 72.9%
3786328 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.41e-01 88.2% 53.5%
3285969 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 44.0 3.56e-01 89.7% 51.1%
4780493 3293.1.1.1 ↗ beta barrels › LARA domain › LARA domain › LARA domain › LARA_dom 0.55 42.0 4.13e-01 86.8% 100.0%
3588234 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.54 44.0 3.90e-01 89.7% 61.0%
3183270 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.28e-01 77.9% 69.9%
3833030 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.54 47.0 3.83e-01 100.0% 79.3%
3258907 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.54 42.0 3.51e-01 89.7% 47.7%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.53 35.0 3.29e-01 77.9% 54.2%
3242650 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.29e-01 100.0% 87.0%
3645007 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 38.0 3.57e-01 77.9% 78.8%
5049481 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.39e-01 85.3% 48.8%
3499652 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 43.0 2.92e-01 94.1% 33.2%
140020 11.1.1.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N 0.52 43.0 3.90e-01 94.1% 75.5%
3442191 10.35.1.1 ↗ beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N 0.52 44.0 3.25e-01 100.0% 66.2%
3936403 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.70e-01 92.6% 84.8%
3588736 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.42e-01 95.6% 100.0%
3994333 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.69e-01 97.1% 80.0%
3885282 10.32.1.195 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAAT-like 0.50 43.0 3.35e-01 95.6% 84.0%
5060347 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.50 41.0 2.56e-01 98.5% 17.6%