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MH729379.1__AXY81263.1__AVP_147__00147

Bact-Vir

MH729379.1__AXY81263.1__AVP_147__00147

Identity

Accession:
MH729379 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Aerococcus_phage_vB_AviM_AVP

TaxID: 2495576

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-173
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D10-175
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hbxA03 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.62 31.0 4.06e-01 80.8% 87.5%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.60 26.0 3.02e-01 83.8% 53.9%
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.56 19.0 2.98e-01 100.0% 81.1%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.56 35.0 4.10e-01 71.9% 90.3%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.56 18.0 3.26e-01 83.8% 92.5%
4wrnA02 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.54 34.0 4.08e-01 84.4% 98.1%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.53 27.0 2.86e-01 91.6% 53.0%
3bb8A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 37.0 4.04e-01 92.2% 93.9%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 41.0 3.56e-01 97.6% 56.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054725 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.58 27.0 3.14e-01 90.4% 60.0%
3897871 11.1.1.640 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.55 34.0 4.00e-01 83.8% 89.4%
3701022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 34.0 3.86e-01 96.4% 81.6%
4376921 11.1.1.640 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.53 31.0 3.67e-01 93.4% 81.7%
3781073 223.2.1.29 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.53 31.0 3.35e-01 92.2% 68.6%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.50 30.0 3.53e-01 70.1% 85.8%
401471 271.1.1.0 ↗ beta barrels › GFP-like › GFP-like › GFP-like 0.50 41.0 3.56e-01 97.6% 56.6%
5029881 310.3.1.26 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HVO_2525_N 0.50 40.0 4.26e-01 95.8% 95.9%
D2 high residues 187-292
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D184-294
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 52.0 5.18e-01 84.9% 67.9%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 48.0 5.33e-01 87.7% 79.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 32.0 4.87e-01 91.5% 93.6%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 57.0 5.40e-01 84.0% 86.2%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.70 50.0 4.62e-01 84.9% 59.0%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.69 50.0 4.67e-01 87.7% 60.6%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 30.0 3.72e-01 77.4% 65.2%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.68 58.0 5.40e-01 96.2% 74.4%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.65 55.0 5.07e-01 95.3% 71.0%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.64 39.0 4.87e-01 77.4% 97.0%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.63 43.0 4.32e-01 84.0% 69.8%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.87e-01 84.9% 86.1%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 4.23e-01 84.9% 63.4%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 35.0 3.18e-01 100.0% 43.3%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 37.0 3.55e-01 77.4% 57.5%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.57 40.0 3.74e-01 78.3% 59.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 32.0 3.94e-01 92.5% 93.3%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 37.0 3.29e-01 78.3% 47.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.70e-01 100.0% 80.6%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 37.0 4.03e-01 78.3% 81.1%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.55 30.0 3.67e-01 84.9% 91.5%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.54 39.0 4.38e-01 100.0% 97.6%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 39.0 3.79e-01 84.9% 71.9%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 40.0 3.00e-01 87.7% 34.0%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.73e-01 80.2% 91.6%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 37.0 3.61e-01 82.1% 68.1%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 4.06e-01 77.4% 94.6%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.67e-01 91.5% 98.1%
3fwlA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 40.0 2.71e-01 85.8% 66.8%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924833 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 57.0 5.44e-01 87.7% 64.2%
3782222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 54.0 4.71e-01 88.7% 48.4%
3742641 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.78 54.0 5.38e-01 90.6% 69.1%
3509508 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.77 51.0 5.44e-01 84.9% 75.8%
3298632 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.77 53.0 5.50e-01 90.6% 75.0%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 50.0 5.43e-01 84.9% 78.9%
3700838 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.76 52.0 4.82e-01 84.9% 56.9%
3587958 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 52.0 5.66e-01 82.1% 84.4%
3219484 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.74 51.0 5.26e-01 90.6% 75.0%
4962251 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.72 60.0 5.52e-01 87.7% 84.4%
3616221 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 53.0 4.55e-01 87.7% 49.7%
4029828 220.1.1.59 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH1_SSRP1-like 0.71 51.0 4.63e-01 84.9% 56.4%
3949336 220.1.1.216 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.71 47.0 4.71e-01 84.0% 65.5%
4962224 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.71 59.0 4.94e-01 87.7% 71.8%
4144845 220.1.1.289 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › HdcB 0.70 44.0 4.39e-01 84.9% 60.9%
4937908 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.70 48.0 4.24e-01 84.9% 49.7%
3777215 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 48.0 4.92e-01 87.7% 75.0%
3224246 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 51.0 5.22e-01 84.9% 78.8%
4960211 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.68 52.0 5.46e-01 100.0% 89.5%
3887129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 42.0 4.53e-01 84.9% 73.3%
3715264 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 56.0 5.34e-01 87.7% 83.3%
3233686 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.67 50.0 4.52e-01 84.9% 57.9%
4965160 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.66 48.0 5.01e-01 91.5% 84.2%
3482713 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 54.0 4.94e-01 87.7% 69.6%
3992398 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.64 52.0 5.06e-01 87.7% 79.1%
4945655 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 42.0 4.29e-01 87.7% 71.0%
5074455 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 40.0 4.03e-01 77.4% 64.5%
3619467 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.61 47.0 4.70e-01 84.9% 79.1%
3613385 220.1.1.21 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.60 42.0 3.98e-01 83.0% 60.8%
4945712 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.86e-01 78.3% 60.0%
4944923 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.83e-01 78.3% 58.5%
5046979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 39.0 3.87e-01 77.4% 64.5%
5072371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 40.0 4.16e-01 77.4% 74.0%
4944998 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 3.83e-01 78.3% 60.8%
4943690 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 40.0 3.59e-01 77.4% 52.4%
4945318 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 40.0 3.94e-01 82.1% 66.1%
4945232 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 4.10e-01 83.0% 67.5%
3865052 220.1.1.21 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.58 43.0 3.88e-01 84.0% 58.6%
4996048 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 40.0 3.72e-01 77.4% 58.5%
5068533 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 41.0 3.81e-01 78.3% 60.0%
5049697 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 3.76e-01 79.2% 60.8%
4012772 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 4.01e-01 84.9% 65.6%
5038289 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 41.0 3.78e-01 79.2% 59.3%
3390111 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.56 38.0 4.19e-01 82.1% 82.2%
5074976 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 40.0 3.59e-01 77.4% 55.0%
3927907 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.56 36.0 4.07e-01 78.3% 83.5%
5073557 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 44.0 4.01e-01 86.8% 63.6%
4978955 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.87e-01 83.0% 63.8%
5036974 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.98e-01 84.9% 74.0%
4976967 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 46.0 4.03e-01 87.7% 63.3%
5051015 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 44.0 3.80e-01 84.9% 56.8%
4944860 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 43.0 3.90e-01 86.8% 62.9%
4946458 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.71e-01 77.4% 63.7%
5049349 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 44.0 3.80e-01 84.9% 60.6%
3741339 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 4.10e-01 84.9% 86.0%
3616431 5.1.4.103 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DCAF17 0.52 43.0 2.76e-01 87.7% 98.2%
3492395 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 4.19e-01 82.1% 90.0%
5052178 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 39.0 3.92e-01 85.8% 75.5%
4971503 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 39.0 3.69e-01 84.9% 64.8%
2042120 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.52 39.0 3.72e-01 77.4% 74.8%
4356830 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 4.18e-01 84.9% 94.1%
3513247 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 38.0 4.09e-01 84.9% 86.3%
3270840 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 38.0 4.18e-01 84.9% 91.1%
4964148 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 4.02e-01 85.8% 80.0%
4971324 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 38.0 4.15e-01 84.9% 91.1%
3701440 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 38.0 4.16e-01 84.9% 92.2%
3704789 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 37.0 3.93e-01 84.9% 83.7%
3394732 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 37.0 4.07e-01 84.9% 91.1%