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MH744418.1__AYD81274.1__SEA_JUSTBECAUSE_105__00105
Bact-VirMH744418.1__AYD81274.1__SEA_JUSTBECAUSE_105__00105
Identity
- Accession:
- MH744418 ↗
- Kingdom:
- phage
Quality
48.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 410-470
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.81 | 52.0 | 5.42e-01 | 70.5% | 72.7% |
| 4go1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 52.0 | 5.54e-01 | 91.8% | 77.8% |
| 1jhgA00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.76 | 52.0 | 4.44e-01 | 72.1% | 43.6% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.75 | 50.0 | 4.89e-01 | 93.4% | 64.6% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 46.0 | 5.21e-01 | 91.8% | 86.4% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 45.0 | 4.77e-01 | 70.5% | 70.9% |
| 4jykA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 50.0 | 5.18e-01 | 73.8% | 100.0% |
| 6s6hA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.71 | 52.0 | 4.32e-01 | 100.0% | 44.0% |
| 3o4zA02 | 1.25.40.720 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain | 0.70 | 63.0 | 4.39e-01 | 100.0% | 56.7% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 52.0 | 5.48e-01 | 100.0% | 90.7% |
| 2x0cA01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.69 | 57.0 | 4.09e-01 | 91.8% | 45.5% |
| 4hbdA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.68 | 60.0 | 4.01e-01 | 100.0% | 30.6% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.68 | 48.0 | 4.11e-01 | 75.4% | 85.4% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 59.0 | 4.88e-01 | 100.0% | 71.4% |
| 1hqoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 59.0 | 4.63e-01 | 100.0% | 64.9% |
| 6whbA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 59.0 | 3.83e-01 | 100.0% | 23.1% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 45.0 | 4.39e-01 | 70.5% | 68.7% |
| 3gs3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 56.0 | 3.72e-01 | 95.1% | 53.0% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 45.0 | 4.62e-01 | 73.8% | 76.7% |
| 5jnmA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.64 | 50.0 | 3.62e-01 | 85.2% | 34.5% |
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.64 | 57.0 | 4.50e-01 | 100.0% | 67.2% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 47.0 | 4.03e-01 | 85.2% | 48.0% |
| 7jplA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 55.0 | 4.51e-01 | 100.0% | 59.0% |
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 55.0 | 3.92e-01 | 100.0% | 41.2% |
| 5u56A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 53.0 | 4.38e-01 | 96.7% | 89.3% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 48.0 | 4.13e-01 | 91.8% | 81.7% |
| 2hdwA02 | 1.10.10.800 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 46.0 | 4.02e-01 | 82.0% | 95.6% |
| 3wecA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 54.0 | 3.25e-01 | 100.0% | 18.5% |
| 4nvsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 51.0 | 3.77e-01 | 100.0% | 37.4% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.59 | 48.0 | 3.57e-01 | 88.5% | 71.2% |
| 3mvpA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 40.0 | 4.48e-01 | 72.1% | 97.9% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 48.0 | 3.28e-01 | 90.2% | 59.8% |
| 2lfwA01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.57 | 50.0 | 3.86e-01 | 100.0% | 80.1% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 47.0 | 3.05e-01 | 95.1% | 37.5% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 44.0 | 3.48e-01 | 100.0% | 51.7% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.92e-01 | 96.7% | 66.0% |
| 2vyrA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.51 | 42.0 | 3.86e-01 | 98.4% | 68.2% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5070906 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 54.0 | 5.49e-01 | 86.9% | 66.7% |
| 4994133 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.82 | 59.0 | 5.26e-01 | 75.4% | 54.1% |
| 5045749 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.82 | 59.0 | 5.84e-01 | 75.4% | 70.8% |
| 3604094 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.82 | 65.0 | 4.66e-01 | 85.2% | 86.1% |
| 5064868 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.81 | 58.0 | 5.05e-01 | 75.4% | 51.1% |
| 4994233 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.81 | 59.0 | 5.39e-01 | 77.0% | 60.0% |
| 3957920 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.81 | 65.0 | 3.97e-01 | 85.2% | 26.0% |
| 4941741 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.80 | 64.0 | 4.75e-01 | 85.2% | 80.0% |
| 5014241 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.80 | 55.0 | 4.91e-01 | 100.0% | 51.8% |
| 5030797 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.80 | 59.0 | 5.18e-01 | 78.7% | 85.6% |
| 5074942 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.80 | 59.0 | 5.45e-01 | 77.0% | 64.0% |
| 4263447 | 3801.1.1.4 ↗ | extended segments › ParE2-associated antitoxin 2 (PaaA2) › ParE2-associated antitoxin 2 (PaaA2) › ParE2-associated antitoxin 2 (PaaA2) › UPF0175 | 0.78 | 47.0 | 5.31e-01 | 91.8% | 82.2% |
| 5050966 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.78 | 59.0 | 5.07e-01 | 80.3% | 80.0% |
| 5077693 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.77 | 60.0 | 5.37e-01 | 83.6% | 90.6% |
| 4992849 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.77 | 55.0 | 5.07e-01 | 77.0% | 60.0% |
| 4595970 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 57.0 | 5.83e-01 | 100.0% | 81.7% |
| 3567273 | 101.1.1.35 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq | 0.76 | 48.0 | 5.49e-01 | 90.2% | 86.7% |
| 4036522 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.76 | 62.0 | 5.41e-01 | 91.8% | 60.0% |
| 5072014 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.75 | 58.0 | 5.46e-01 | 83.6% | 96.0% |
| 4524825 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.74 | 62.0 | 5.35e-01 | 91.8% | 61.1% |
| 3389609 | 101.1.1.35 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq | 0.72 | 50.0 | 4.81e-01 | 90.2% | 62.9% |
| 4437729 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.71 | 64.0 | 5.35e-01 | 100.0% | 60.0% |
| 4439631 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.71 | 45.0 | 4.69e-01 | 70.5% | 70.9% |
| 4927193 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.71 | 53.0 | 4.41e-01 | 80.3% | 85.7% |
| 4482156 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.70 | 54.0 | 4.01e-01 | 83.6% | 35.5% |
| 3512259 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.70 | 63.0 | 5.21e-01 | 100.0% | 68.6% |
| 3504408 | 6132.1.1.1 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix_N | 0.70 | 53.0 | 5.37e-01 | 85.2% | 85.0% |
| 3976607 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.69 | 60.0 | 5.04e-01 | 93.4% | 58.0% |
| 3511215 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 58.0 | 5.62e-01 | 96.7% | 87.1% |
| 3472286 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.67 | 51.0 | 3.83e-01 | 83.6% | 35.5% |
| 4644409 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.67 | 51.0 | 3.32e-01 | 82.0% | 21.7% |
| 5028153 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 51.0 | 4.67e-01 | 100.0% | 62.7% |
| 4530329 | 101.1.8.14 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 | 0.66 | 51.0 | 5.21e-01 | 100.0% | 86.7% |
| 5013438 | 101.1.2.881 ↗ | alpha arrays › HTH › HTH › winged helix domain › UPF0175 | 0.65 | 54.0 | 5.50e-01 | 100.0% | 93.3% |
| 4327553 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.65 | 55.0 | 4.86e-01 | 100.0% | 84.2% |
| 3622106 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.64 | 55.0 | 2.91e-01 | 98.4% | 13.3% |
| 3738663 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.63 | 55.0 | 4.04e-01 | 98.4% | 52.1% |
| 3555742 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.63 | 53.0 | 4.86e-01 | 98.4% | 85.9% |
| 4034309 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.62 | 50.0 | 3.22e-01 | 86.9% | 21.8% |
| 4160603 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.62 | 54.0 | 3.92e-01 | 98.4% | 55.4% |
| 3856780 | 109.4.1.30 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT | 0.62 | 54.0 | 3.95e-01 | 100.0% | 40.0% |
| 1930746 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.61 | 52.0 | 4.17e-01 | 100.0% | 64.4% |
| 4861235 | 3078.1.1.1 ↗ | extended segments › RNA polymerase PB1 C-terminal fragment › RNA polymerase PB1 C-terminal fragment › RNA polymerase PB1 C-terminal fragment › Flu_PB1 | 0.60 | 46.0 | 4.76e-01 | 86.9% | 87.5% |
| 3289608 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.60 | 45.0 | 4.29e-01 | 83.6% | 69.3% |
| 4966195 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.59 | 52.0 | 4.97e-01 | 100.0% | 84.3% |
| 3908710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 51.0 | 4.42e-01 | 96.7% | 87.4% |
| 4948165 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 50.0 | 4.08e-01 | 100.0% | 86.4% |
| None | — | 0.54 | 47.0 | 4.62e-01 | 100.0% | 100.0% | |
| 3776754 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.54 | 44.0 | 4.39e-01 | 100.0% | 90.8% |
| 4929137 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 3.58e-01 | 83.6% | 84.2% |
| 3281471 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.53 | 48.0 | 4.40e-01 | 100.0% | 77.5% |