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MH744418.1__AYD81328.1__SEA_JUSTBECAUSE_163__00159

Bact-Vir

MH744418.1__AYD81328.1__SEA_JUSTBECAUSE_163__00159

Identity

Accession:
MH744418 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_JustBecause

TaxID: 2315618

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-83
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.68 43.0 4.71e-01 73.1% 79.4%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 49.0 3.32e-01 80.8% 27.1%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.57 39.0 3.77e-01 71.8% 88.9%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 39.0 4.07e-01 71.8% 87.0%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.56 34.0 3.91e-01 75.6% 87.0%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.10e-01 87.2% 75.7%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.56 39.0 3.59e-01 74.4% 68.6%
4gwmB03 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.55 39.0 3.10e-01 74.4% 85.4%
5hx0A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 47.0 3.09e-01 100.0% 41.6%
8e9gE02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 3.77e-01 85.9% 68.9%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.83e-01 73.1% 86.6%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 43.0 2.96e-01 98.7% 36.9%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 38.0 3.76e-01 78.2% 97.6%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.89e-01 100.0% 43.5%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 3.02e-01 98.7% 40.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.51 42.0 3.61e-01 97.4% 69.3%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 41.0 3.04e-01 93.6% 68.3%
1vhoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 42.0 3.13e-01 100.0% 78.4%
3u04A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 37.0 2.94e-01 78.2% 68.6%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.50 34.0 2.85e-01 71.8% 64.2%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 37.0 3.07e-01 80.8% 70.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943930 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.71 42.0 5.05e-01 73.1% 92.0%
3856809 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 44.0 4.21e-01 73.1% 62.2%
3382011 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.62 43.0 4.31e-01 73.1% 70.0%
3684267 5.1.10.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 0.61 47.0 4.01e-01 83.3% 50.0%
3333293 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 39.0 4.01e-01 71.8% 84.0%
3439467 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.57 41.0 3.53e-01 76.9% 92.3%
3743052 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.56 41.0 2.63e-01 80.8% 21.6%
3811901 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 38.0 4.01e-01 73.1% 92.3%
3707019 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.01e-01 98.7% 25.1%
3283725 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.54 43.0 4.14e-01 89.7% 85.6%
3476644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 29.0 3.68e-01 76.9% 100.0%
4635042 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 40.0 2.78e-01 82.1% 96.1%
3709353 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 33.0 3.79e-01 85.9% 96.0%
3419663 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 37.0 3.22e-01 74.4% 78.4%
4009733 2011.1.1.11 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M42 0.51 43.0 3.04e-01 96.2% 80.0%