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MH744418.1__AYD81363.1__SEA_JUSTBECAUSE_208__00194

Bact-Vir

MH744418.1__AYD81363.1__SEA_JUSTBECAUSE_208__00194

Identity

Accession:
MH744418 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_JustBecause

TaxID: 2315618

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-90
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00149__D137-219
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 54.0 4.02e-01 100.0% 43.3%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.61 42.0 4.03e-01 95.5% 62.4%
4yzrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 45.0 3.00e-01 88.6% 98.2%
4ux7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.57 42.0 3.32e-01 81.8% 71.1%
2fp4B02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 50.0 5.01e-01 98.9% 95.6%
2e0nB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.56 37.0 3.47e-01 100.0% 53.6%
3psqB00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.55 42.0 3.38e-01 81.8% 79.1%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.55 48.0 4.57e-01 97.7% 93.1%
1gpjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 42.0 3.55e-01 86.4% 100.0%
4y4qA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.53 39.0 3.25e-01 80.7% 78.2%
3dnpA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 43.0 3.98e-01 95.5% 69.0%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 24.0 3.38e-01 72.7% 97.4%
1m2gA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.52 38.0 3.74e-01 97.7% 73.1%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 38.0 3.89e-01 100.0% 84.1%
6ei9A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 38.0 2.90e-01 81.8% 89.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5059227 206.1.3.41 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter 0.71 63.0 4.56e-01 100.0% 36.5%
5066729 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.71 44.0 4.43e-01 93.2% 61.1%
3600733 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.67 50.0 4.31e-01 100.0% 50.0%
4028466 206.1.3.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL, ATPgrasp_YheCD 0.67 43.0 2.89e-01 100.0% 17.3%
3964762 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.66 48.0 4.25e-01 100.0% 53.6%
3988613 3012.1.1.4 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.66 50.0 4.65e-01 95.5% 64.5%
4953358 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.64 51.0 3.68e-01 100.0% 31.0%
4599970 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 51.0 3.74e-01 100.0% 35.4%
5058603 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.57 51.0 4.77e-01 98.9% 88.2%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.56 52.0 5.09e-01 100.0% 93.7%
4948516 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.56 39.0 3.47e-01 73.9% 91.0%
4999007 2002.4.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C 0.55 43.0 3.06e-01 84.1% 55.9%
142114 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.54 40.0 3.25e-01 81.8% 79.0%
4479016 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.53 40.0 3.75e-01 95.5% 64.5%
2129791 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.52 38.0 2.94e-01 78.4% 77.3%
811 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.52 41.0 3.16e-01 90.9% 86.8%
3592717 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 37.0 2.95e-01 75.0% 85.7%
3610214 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 45.0 4.16e-01 100.0% 84.3%
4944045 4.17.1.2 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.51 36.0 3.86e-01 90.9% 92.9%
4960126 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.50 44.0 3.76e-01 100.0% 64.7%