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MH744418.1__AYD81371.1__SEA_JUSTBECAUSE_216__00202
Bact-VirMH744418.1__AYD81371.1__SEA_JUSTBECAUSE_216__00202
Identity
- Accession:
- MH744418 ↗
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 95-170
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 53.0 | 4.81e-01 | 78.9% | 61.4% |
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 46.0 | 5.24e-01 | 72.4% | 98.1% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.68 | 47.0 | 4.49e-01 | 71.1% | 70.9% |
| 7csoA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.68 | 53.0 | 3.81e-01 | 84.2% | 63.2% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.68 | 51.0 | 3.81e-01 | 80.3% | 76.5% |
| 3crjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 56.0 | 4.28e-01 | 92.1% | 52.5% |
| 5c4yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 51.0 | 4.23e-01 | 81.6% | 65.4% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 46.0 | 4.49e-01 | 73.7% | 96.5% |
| 2c42A06 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.64 | 46.0 | 2.93e-01 | 76.3% | 22.6% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 44.0 | 4.46e-01 | 73.7% | 93.3% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 45.0 | 3.68e-01 | 76.3% | 60.4% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 45.0 | 3.71e-01 | 75.0% | 50.0% |
| 3o6xA02 | 1.20.120.1560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 46.0 | 3.75e-01 | 78.9% | 42.6% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 49.0 | 4.06e-01 | 88.2% | 67.6% |
| 4kx7A04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.61 | 46.0 | 3.01e-01 | 80.3% | 65.9% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.61 | 44.0 | 3.93e-01 | 76.3% | 81.5% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.60 | 43.0 | 4.17e-01 | 75.0% | 69.8% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 45.0 | 3.77e-01 | 85.5% | 72.5% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.58 | 39.0 | 3.21e-01 | 71.1% | 35.3% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 40.0 | 3.58e-01 | 73.7% | 90.4% |
| 2gkmA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 41.0 | 3.48e-01 | 75.0% | 90.6% |
| 3qsgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 41.0 | 3.64e-01 | 76.3% | 98.3% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 44.0 | 3.40e-01 | 89.5% | 83.8% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 36.0 | 2.68e-01 | 75.0% | 41.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002845 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.81 | 45.0 | 3.78e-01 | 98.7% | 35.0% |
| 4026843 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.73 | 42.0 | 4.46e-01 | 78.9% | 64.3% |
| 3913809 | 150.1.1.101 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MARVEL | 0.73 | 52.0 | 4.11e-01 | 75.0% | 66.7% |
| 3197399 | 109.4.1.414 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N | 0.71 | 48.0 | 2.93e-01 | 73.7% | 10.7% |
| 3504306 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 61.0 | 5.50e-01 | 100.0% | 100.0% |
| 3630736 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.68 | 59.0 | 3.60e-01 | 100.0% | 20.2% |
| 5069958 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 42.0 | 3.83e-01 | 76.3% | 47.0% |
| 5076902 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.68 | 48.0 | 4.27e-01 | 77.6% | 51.8% |
| 3568905 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 59.0 | 3.52e-01 | 100.0% | 29.8% |
| 3813598 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 60.0 | 3.51e-01 | 98.7% | 14.0% |
| 3798370 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 61.0 | 3.58e-01 | 100.0% | 15.1% |
| 3681694 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.65 | 45.0 | 4.55e-01 | 73.7% | 72.0% |
| 3503766 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.65 | 56.0 | 3.39e-01 | 100.0% | 27.3% |
| 3189554 | 109.4.1.901 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1 | 0.64 | 44.0 | 3.51e-01 | 72.4% | 34.8% |
| None | — | 0.63 | 49.0 | 3.06e-01 | 88.2% | 18.8% | |
| 3328228 | 601.33.1.7 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Exo70_N | 0.62 | 43.0 | 4.25e-01 | 73.7% | 83.5% |
| 5035200 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.62 | 46.0 | 4.67e-01 | 78.9% | 84.0% |
| 4192211 | 192.29.1.159 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › ATG2_CAD | 0.62 | 43.0 | 3.70e-01 | 72.4% | 46.7% |
| 4489939 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.61 | 42.0 | 4.62e-01 | 72.4% | 95.0% |
| 4025954 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.60 | 51.0 | 3.65e-01 | 98.7% | 43.2% |
| 3323416 | 3831.1.1.7 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › DUF842 | 0.60 | 49.0 | 4.37e-01 | 88.2% | 100.0% |
| 4451459 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.59 | 49.0 | 4.08e-01 | 88.2% | 58.4% |
| 4140504 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.58 | 50.0 | 4.60e-01 | 92.1% | 100.0% |
| 3473556 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.56 | 39.0 | 4.06e-01 | 72.4% | 78.6% |
| 3384318 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.56 | 39.0 | 4.01e-01 | 75.0% | 93.3% |
| 3862034 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.56 | 44.0 | 4.29e-01 | 86.8% | 100.0% |
| 5074955 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.55 | 45.0 | 4.23e-01 | 85.5% | 94.4% |
| 3459621 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.54 | 47.0 | 4.29e-01 | 94.7% | 99.0% |
D2
medium
residues 1-94
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.73 | 51.0 | 5.13e-01 | 71.3% | 86.0% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 54.0 | 5.66e-01 | 81.9% | 96.5% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 44.0 | 4.67e-01 | 71.3% | 97.5% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 28.0 | 3.74e-01 | 73.4% | 89.8% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 31.0 | 3.78e-01 | 79.8% | 88.5% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 36.0 | 3.56e-01 | 70.2% | 86.1% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.52 | 36.0 | 3.78e-01 | 70.2% | 100.0% |
| 1fgyA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.48e-01 | 78.7% | 93.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4451993 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.82 | 52.0 | 6.39e-01 | 70.2% | 100.0% |
| 4280097 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.80 | 49.0 | 6.00e-01 | 70.2% | 96.7% |
| 4499953 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.78 | 49.0 | 6.02e-01 | 70.2% | 100.0% |
| 3839016 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.75 | 49.0 | 5.74e-01 | 71.3% | 95.4% |
| 4425420 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.71 | 50.0 | 5.32e-01 | 73.4% | 96.5% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.71 | 49.0 | 5.62e-01 | 71.3% | 100.0% |
| 3959531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 47.0 | 5.33e-01 | 70.2% | 91.4% |
| 3574742 | 4.1.1.47 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin6 | 0.70 | 54.0 | 5.59e-01 | 81.9% | 100.0% |
| 3624163 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 54.0 | 5.57e-01 | 81.9% | 100.0% |
| 157624 | 4.1.1.47 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin6 | 0.69 | 54.0 | 5.66e-01 | 81.9% | 96.5% |
| 3177842 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.68 | 48.0 | 4.40e-01 | 72.3% | 75.0% |
| 4022153 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.66 | 48.0 | 4.18e-01 | 76.6% | 93.1% |
| 4020096 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.66 | 48.0 | 4.21e-01 | 76.6% | 93.6% |
| 4027422 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.65 | 38.0 | 4.70e-01 | 72.3% | 98.2% |
| 2664854 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.64 | 46.0 | 4.54e-01 | 75.5% | 70.6% |
| 2127495 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.64 | 46.0 | 3.87e-01 | 75.5% | 45.3% |
| 3781383 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 41.0 | 4.21e-01 | 81.9% | 81.1% |
| 3918340 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.54 | 35.0 | 3.92e-01 | 93.6% | 90.0% |
| 3606266 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 42.0 | 2.63e-01 | 84.0% | 46.2% |
| 5032977 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 40.0 | 4.22e-01 | 79.8% | 95.0% |
| 3675483 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 3.04e-01 | 98.9% | 67.5% |
| 4952430 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.52 | 36.0 | 3.45e-01 | 72.3% | 80.0% |
| 4102093 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 44.0 | 2.91e-01 | 97.9% | 74.5% |