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MH744418.1__AYD81450.1__SEA_JUSTBECAUSE_295__00281
Bact-VirMH744418.1__AYD81450.1__SEA_JUSTBECAUSE_295__00281
Identity
- Accession:
- MH744418 ↗
- Kingdom:
- phage
Quality
69.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-97
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wadA01 | 6.20.70.10 | Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › | 0.77 | 29.0 | 4.62e-01 | 76.1% | 100.0% |
| 6ifnA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.70 | 49.0 | 3.98e-01 | 73.9% | 84.6% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 45.0 | 4.43e-01 | 75.0% | 63.2% |
| 2edyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 42.0 | 4.02e-01 | 76.1% | 55.3% |
| 4pbxA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 43.0 | 4.24e-01 | 76.1% | 63.0% |
| 4dohB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 43.0 | 4.37e-01 | 76.1% | 69.3% |
| 3fm2A00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.62 | 32.0 | 2.78e-01 | 81.8% | 32.3% |
| 1blwA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 43.0 | 4.13e-01 | 75.0% | 62.7% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 43.0 | 3.39e-01 | 73.9% | 43.0% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.61 | 44.0 | 4.26e-01 | 75.0% | 84.0% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 42.0 | 4.06e-01 | 75.0% | 61.8% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 41.0 | 4.02e-01 | 73.9% | 63.5% |
| 5jtwA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 42.0 | 4.08e-01 | 79.5% | 63.7% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 4.00e-01 | 75.0% | 64.9% |
| 1cfbA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 4.08e-01 | 81.8% | 63.2% |
| 3bigA02 | 3.40.190.90 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.60 | 45.0 | 3.71e-01 | 81.8% | 93.9% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 48.0 | 4.72e-01 | 100.0% | 85.1% |
| 3v6oA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 3.91e-01 | 75.0% | 70.1% |
| 4kkdB04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 45.0 | 4.01e-01 | 84.1% | 78.2% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.57 | 39.0 | 3.17e-01 | 75.0% | 36.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.57 | 51.0 | 4.13e-01 | 100.0% | 74.9% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 50.0 | 4.94e-01 | 98.9% | 95.7% |
| 2drvA00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.55 | 43.0 | 3.35e-01 | 83.0% | 52.9% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.55 | 38.0 | 4.03e-01 | 98.9% | 80.8% |
| 3dshA01 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 40.0 | 3.08e-01 | 79.5% | 42.6% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 37.0 | 3.16e-01 | 73.9% | 51.3% |
| 2zvbA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.53 | 42.0 | 3.72e-01 | 86.4% | 73.4% |
| 3nutB02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.51 | 43.0 | 3.83e-01 | 94.3% | 82.8% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 43.0 | 3.56e-01 | 100.0% | 61.5% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.51 | 37.0 | 3.09e-01 | 78.4% | 45.7% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.51 | 43.0 | 3.61e-01 | 100.0% | 68.6% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 42.0 | 3.60e-01 | 93.2% | 67.6% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 33.0 | 3.09e-01 | 80.7% | 49.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4971835 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.69 | 48.0 | 4.45e-01 | 72.7% | 90.4% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.69 | 50.0 | 5.42e-01 | 83.0% | 89.3% |
| 3508717 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 48.0 | 5.21e-01 | 94.3% | 98.6% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.63 | 41.0 | 4.63e-01 | 72.7% | 95.0% |
| 5037079 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 42.0 | 4.68e-01 | 75.0% | 98.5% |
| 3998039 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 47.0 | 3.80e-01 | 86.4% | 87.6% |
| 4031235 | 3986.2.1.2 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › DUF2922 | 0.59 | 40.0 | 4.32e-01 | 70.5% | 98.6% |
| 3359658 | 11.1.4.77 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_6th | 0.57 | 41.0 | 3.97e-01 | 76.1% | 66.0% |
| 3514371 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.57 | 50.0 | 3.81e-01 | 100.0% | 63.7% |
| 3519956 | 11.1.1.652 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd | 0.57 | 37.0 | 3.55e-01 | 75.0% | 56.2% |
| 3169602 | 387.1.6.2 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Conotoxin Mo3964 › Sin3a_C | 0.56 | 39.0 | 2.87e-01 | 73.9% | 57.0% |
| 3668019 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 38.0 | 4.22e-01 | 73.9% | 88.6% |
| 4023517 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 41.0 | 3.59e-01 | 78.4% | 57.8% |
| 3669363 | 11.1.1.389 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EDR2_C | 0.56 | 40.0 | 3.58e-01 | 76.1% | 76.9% |
| 4933423 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.55 | 39.0 | 2.71e-01 | 73.9% | 28.4% |
| 3863278 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.54 | 41.0 | 3.71e-01 | 81.8% | 71.2% |
| 3409626 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.54 | 43.0 | 4.06e-01 | 100.0% | 70.9% |
| 3790640 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.54 | 45.0 | 3.52e-01 | 95.5% | 56.1% |
| 3394311 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.54 | 44.0 | 4.10e-01 | 100.0% | 72.7% |
| 5045774 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.53 | 47.0 | 4.09e-01 | 100.0% | 68.6% |
| 4566126 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.53 | 38.0 | 3.53e-01 | 75.0% | 75.7% |
| 5047755 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.53 | 47.0 | 4.05e-01 | 100.0% | 69.3% |
| 154683 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 36.0 | 3.46e-01 | 70.5% | 67.6% |
| 4410522 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.52 | 38.0 | 3.18e-01 | 78.4% | 43.6% |
| 4930766 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.52 | 46.0 | 4.02e-01 | 100.0% | 72.6% |
| 3702557 | 3945.1.1.0 ↗ | alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain | 0.52 | 41.0 | 3.65e-01 | 87.5% | 93.1% |
| 3842874 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.52 | 41.0 | 3.92e-01 | 88.6% | 97.1% |
| 3277197 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.52 | 35.0 | 3.47e-01 | 70.5% | 92.6% |
| 3333903 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.51 | 40.0 | 3.10e-01 | 87.5% | 48.2% |
| 3510399 | 206.1.3.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C | 0.51 | 36.0 | 2.79e-01 | 76.1% | 37.7% |
| 4345869 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.51 | 37.0 | 3.46e-01 | 77.3% | 71.8% |
| 5041479 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.51 | 36.0 | 2.83e-01 | 75.0% | 41.1% |
| 4985499 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.50 | 35.0 | 2.75e-01 | 73.9% | 43.0% |
| 4033337 | 302.2.1.0 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit | 0.50 | 39.0 | 3.59e-01 | 85.2% | 67.8% |
| 4316382 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.50 | 41.0 | 3.87e-01 | 92.0% | 86.4% |