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MH744420.1__AYD81621.1__SEA_KROMP_20__00020

Bact-Vir

MH744420.1__AYD81621.1__SEA_KROMP_20__00020

Identity

Accession:
MH744420 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Krompvirus› Streptomyces_phage_Kromp

TaxID: 2315619

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 198-309
PDB
Domain cluster: rep: MZ333134.1__QXG07748.1__X__00016__D390-489
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.79 73.0 6.21e-01 100.0% 96.6%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.79 66.0 6.85e-01 100.0% 96.2%
2fsdA00 2.60.40.2460 Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain 0.78 69.0 7.03e-01 100.0% 97.3%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.76 64.0 6.61e-01 100.0% 95.3%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.71 58.0 4.72e-01 94.6% 47.8%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.67 53.0 4.40e-01 91.1% 48.7%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.67 60.0 5.62e-01 100.0% 97.1%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.66 58.0 4.61e-01 94.6% 49.5%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 47.0 4.92e-01 91.1% 82.2%
3dhuA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 42.0 4.89e-01 100.0% 97.3%
3vmnA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 54.0 5.01e-01 97.3% 97.9%
3vl9B00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.61 55.0 4.43e-01 100.0% 92.8%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 46.0 5.01e-01 92.9% 100.0%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 36.0 4.31e-01 100.0% 100.0%
4fx5A01 2.60.40.3670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 46.0 4.32e-01 92.0% 66.2%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.60 40.0 4.07e-01 74.1% 68.8%
5x7qA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 49.0 4.77e-01 91.1% 93.7%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 52.0 5.01e-01 98.2% 99.2%
6ovbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 50.0 4.51e-01 94.6% 86.4%
4qawH03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 48.0 4.61e-01 92.0% 87.3%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 48.0 4.38e-01 92.9% 84.4%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 48.0 4.45e-01 92.9% 89.0%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 4.30e-01 72.3% 98.9%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.57 46.0 3.67e-01 87.5% 76.0%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 50.0 4.50e-01 100.0% 88.1%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 47.0 4.47e-01 93.8% 88.4%
2y8kA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 47.0 4.39e-01 93.8% 91.7%
3wnkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 48.0 4.68e-01 96.4% 99.2%
3c7fA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 46.0 4.35e-01 93.8% 83.1%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 48.0 4.65e-01 100.0% 95.5%
1im3D00 2.60.40.1200 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 4.19e-01 99.1% 88.4%
3km5A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.14e-01 100.0% 93.9%
4zxeC00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 4.48e-01 100.0% 93.4%
2zxqA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 48.0 4.30e-01 100.0% 99.4%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.53 43.0 3.91e-01 92.0% 77.2%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 3.83e-01 86.6% 90.0%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.02e-01 100.0% 90.7%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 4.23e-01 93.8% 91.3%
4nplA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.50 45.0 3.66e-01 99.1% 71.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184600 5092.1.1.4 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.78 69.0 7.03e-01 100.0% 97.3%
1156585 5092.1.1.4 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.76 64.0 6.47e-01 100.0% 90.3%
3512122 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.71 58.0 4.87e-01 94.6% 53.0%
5053832 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.68 56.0 4.70e-01 92.0% 51.8%
1851176 5092.1.1.0 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins 0.67 61.0 5.72e-01 100.0% 99.3%
4680309 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 51.0 4.60e-01 90.2% 77.4%
5083578 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.60 44.0 4.75e-01 82.1% 91.6%
1762256 10.32.1.51 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_35 0.60 50.0 4.78e-01 92.9% 89.4%
3741599 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.59 46.0 4.94e-01 98.2% 100.0%
3226243 10.32.1.218 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.58 44.0 4.38e-01 96.4% 79.1%
4124871 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 48.0 4.74e-01 93.8% 92.7%
3690144 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 4.08e-01 92.0% 72.2%
3225961 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.57 47.0 4.54e-01 92.0% 84.6%
127 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.57 39.0 3.99e-01 75.0% 72.5%
3229884 10.32.1.218 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.57 49.0 4.40e-01 97.3% 79.4%
3573400 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.56 42.0 3.89e-01 78.6% 93.7%
134273 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.56 49.0 4.44e-01 100.0% 88.2%
5002657 12.1.1.114 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.56 39.0 4.40e-01 73.2% 95.3%
3588187 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 46.0 4.27e-01 92.9% 91.2%
3785564 10.32.1.244 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.56 45.0 4.48e-01 94.6% 84.2%
3516562 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.55 46.0 4.31e-01 92.9% 93.6%
3254415 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.55 41.0 4.23e-01 79.5% 84.8%
4982734 1.1.7.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.55 41.0 3.95e-01 81.2% 100.0%
4076905 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.54 48.0 4.26e-01 100.0% 92.1%
4955892 1.1.7.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.54 38.0 3.60e-01 74.1% 95.0%
3179737 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 44.0 4.10e-01 94.6% 88.7%
4944854 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 43.0 3.83e-01 92.0% 68.0%
3579486 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 46.0 4.41e-01 100.0% 95.6%
5039255 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.83e-01 84.8% 80.0%
4172292 1.1.7.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.53 39.0 3.79e-01 78.6% 100.0%
3633918 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 4.17e-01 92.0% 85.6%
3862554 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.52 45.0 3.91e-01 100.0% 87.6%
4981611 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 41.0 4.00e-01 90.2% 76.2%
5081824 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 45.0 4.39e-01 100.0% 91.2%
4294583 10.2.1.31 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin 0.51 42.0 4.18e-01 92.0% 86.7%
5010649 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 37.0 4.04e-01 81.2% 98.9%
D2 medium residues 12-77
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 37.0 2.72e-01 74.2% 23.0%
1b1eA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.57 41.0 3.40e-01 77.3% 77.2%
8onuA01 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.54 35.0 3.04e-01 72.7% 38.4%
1nvpD02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.54 34.0 3.81e-01 71.2% 93.5%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 3.09e-01 92.4% 40.4%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.01e-01 92.4% 38.4%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.52 34.0 3.66e-01 72.7% 88.0%
2p3wB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 36.0 3.19e-01 72.7% 74.0%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 2.98e-01 90.9% 38.7%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 40.0 3.26e-01 89.4% 69.3%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.51 36.0 3.22e-01 90.9% 48.6%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1107991 4166.1.1.4 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › mtd_2nd 0.74 50.0 4.11e-01 71.2% 39.7%
4045888 372.1.1.1 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like › RnaseA 0.58 42.0 3.52e-01 78.8% 72.3%
4330743 3523.1.1.2 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.55 35.0 2.70e-01 72.7% 24.6%
4197077 3523.1.1.2 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.55 36.0 3.11e-01 72.7% 40.0%
3879032 372.1.1.0 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like 0.54 39.0 3.31e-01 78.8% 79.8%
4438837 3523.1.1.2 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.53 38.0 2.91e-01 81.8% 65.8%
1278471 243.1.1.7 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.52 36.0 3.16e-01 92.4% 44.7%
4422902 3523.1.1.2 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.52 38.0 2.83e-01 83.3% 58.5%
4244588 3523.1.1.2 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.51 34.0 2.61e-01 72.7% 25.7%
4343106 3523.1.1.2 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.51 38.0 2.91e-01 84.8% 66.5%
3708545 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.50 27.0 2.62e-01 71.2% 42.5%
D3 medium residues 157-196
PDB
Domain cluster: rep: NC_054680.1__YP_010056577.1__KGH00_gp24__00024__D154-189
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.82 64.0 6.33e-01 90.0% 93.0%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.82 70.0 6.41e-01 100.0% 81.8%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.76 64.0 5.99e-01 100.0% 82.4%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.72 63.0 4.24e-01 100.0% 28.5%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 59.0 4.38e-01 100.0% 42.1%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.71 58.0 3.26e-01 100.0% 8.5%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.70 56.0 3.90e-01 100.0% 32.7%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.70 54.0 4.47e-01 92.5% 53.7%
3x3mA01 3.30.2390.20 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › Type VII secretion system EccB, repeat 1 domain 0.69 48.0 3.80e-01 72.5% 98.8%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 53.0 3.19e-01 92.5% 90.7%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 48.0 4.83e-01 85.0% 94.9%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 51.0 4.09e-01 95.0% 43.5%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.64 48.0 4.84e-01 87.5% 88.1%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 49.0 2.93e-01 92.5% 85.6%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.63 54.0 3.67e-01 100.0% 80.0%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.63 51.0 3.65e-01 97.5% 45.6%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 51.0 2.94e-01 97.5% 20.1%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.62 52.0 3.57e-01 100.0% 83.8%
1uoyA01 2.30.130.50 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.61 49.0 4.56e-01 100.0% 73.7%
4paaA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.61 50.0 3.38e-01 100.0% 61.2%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 3.81e-01 100.0% 74.5%
3l4eA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.61 40.0 2.63e-01 70.0% 99.5%
3kd6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 48.0 2.96e-01 100.0% 17.7%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 48.0 3.57e-01 100.0% 48.8%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 3.62e-01 100.0% 35.5%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.59 48.0 3.16e-01 100.0% 82.5%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 42.0 3.95e-01 87.5% 67.2%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.59 47.0 3.00e-01 100.0% 18.6%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.58 46.0 2.73e-01 100.0% 13.0%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.58 46.0 3.57e-01 97.5% 37.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 3.54e-01 100.0% 35.5%
3l2hA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 46.0 3.24e-01 97.5% 57.8%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 38.0 2.12e-01 70.0% 5.1%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.55 47.0 3.02e-01 100.0% 58.7%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 39.0 3.10e-01 90.0% 49.0%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 40.0 2.37e-01 97.5% 85.0%
2r6zA01 3.40.1630.10 Alpha Beta › 3-Layer(aba) Sandwich › S-adenosyl-L-methionine-dependent methyltransferases › YhiQ-like domain 0.52 39.0 3.73e-01 95.0% 96.3%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 2.59e-01 97.5% 18.9%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.98e-01 100.0% 86.0%
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.52 42.0 3.80e-01 100.0% 78.7%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 39.0 2.69e-01 87.5% 28.7%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.52 35.0 3.23e-01 80.0% 78.3%
2ot9A01 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.51 42.0 2.80e-01 100.0% 80.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3405960 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.91 76.0 7.49e-01 92.5% 95.3%
3900165 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.89 78.0 7.67e-01 97.5% 100.0%
2495545 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.88 74.0 4.15e-01 95.0% 8.8%
3917719 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.86 76.0 7.34e-01 100.0% 100.0%
3523657 5.1.4.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP 0.85 61.0 3.47e-01 77.5% 8.4%
3623217 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.85 74.0 6.91e-01 100.0% 88.0%
3921177 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.83 72.0 6.46e-01 100.0% 70.9%
1505155 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.82 70.0 6.38e-01 100.0% 78.6%
1281772 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.81 68.0 6.25e-01 100.0% 81.5%
3791485 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.80 65.0 3.88e-01 87.5% 14.9%
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.80 71.0 6.87e-01 100.0% 91.1%
3620101 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.79 63.0 5.20e-01 87.5% 52.9%
3989853 77.1.1.13 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.79 69.0 4.04e-01 100.0% 12.7%
3989854 3761.1.1.4 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR 0.79 69.0 5.40e-01 100.0% 47.1%
3987740 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.79 66.0 6.61e-01 95.0% 95.0%
3541285 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.79 59.0 5.19e-01 87.5% 55.0%
1107990 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.76 64.0 6.03e-01 100.0% 84.0%
3514431 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.75 58.0 5.84e-01 85.0% 85.0%
4512216 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 59.0 5.57e-01 90.0% 82.0%
3241867 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.75 58.0 4.87e-01 87.5% 80.0%
3407018 391.1.2.11 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.74 56.0 4.99e-01 90.0% 56.7%
3575826 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.72 55.0 5.23e-01 90.0% 70.0%
4198047 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.72 55.0 5.54e-01 87.5% 85.0%
4088743 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.71 60.0 5.37e-01 100.0% 90.0%
3399337 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.71 48.0 4.64e-01 70.0% 62.2%
3893051 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.71 52.0 5.40e-01 82.5% 91.4%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.71 46.0 3.62e-01 70.0% 31.8%
3550232 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.70 55.0 4.41e-01 90.0% 43.5%
1245465 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.70 54.0 5.09e-01 87.5% 72.0%
3893497 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.70 55.0 5.58e-01 90.0% 90.0%
3231890 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.70 48.0 4.65e-01 70.0% 63.6%
3715600 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 47.0 2.64e-01 70.0% 5.8%
3931293 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.69 54.0 4.51e-01 90.0% 93.3%
4457771 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.69 54.0 4.47e-01 90.0% 49.3%
3915471 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.69 52.0 5.26e-01 85.0% 85.0%
391086 208.1.1.4 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.68 50.0 3.31e-01 85.0% 19.3%
3398420 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.67 49.0 4.99e-01 87.5% 82.5%
4492624 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 55.0 5.06e-01 100.0% 98.2%
3545467 391.1.2.10 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st 0.66 50.0 5.07e-01 87.5% 90.0%
5071089 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.62e-01 87.5% 90.0%
3398945 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.65 49.0 3.57e-01 87.5% 28.3%
4950115 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 50.0 4.58e-01 100.0% 96.7%
4504374 5.1.5.213 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 0.63 51.0 3.01e-01 100.0% 95.7%
4991056 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.63 47.0 4.38e-01 87.5% 69.1%
3501515 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.63 44.0 3.76e-01 77.5% 45.7%
3967702 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.62 50.0 3.73e-01 100.0% 50.4%
3933565 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.61 51.0 2.98e-01 100.0% 21.1%
3973416 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 49.0 2.95e-01 100.0% 88.9%
5069323 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 4.35e-01 92.5% 80.0%
3736331 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 2.88e-01 100.0% 23.2%
4477489 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 49.0 3.42e-01 100.0% 66.2%
3868894 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 48.0 2.84e-01 100.0% 22.9%
3699229 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.58 48.0 2.68e-01 92.5% 20.6%
5012736 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.03e-01 92.5% 68.8%
3870224 2.1.1.267 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30830 0.56 42.0 3.16e-01 97.5% 94.1%
4046575 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.56 44.0 3.38e-01 100.0% 52.2%
4971206 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 46.0 2.70e-01 100.0% 46.1%
1107970 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.54 41.0 3.17e-01 100.0% 48.8%
4026487 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.53 46.0 3.38e-01 97.5% 43.6%
3589515 80.1.1.1 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.52 43.0 3.27e-01 100.0% 95.5%
4675977 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 43.0 3.64e-01 100.0% 81.3%
4986395 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 42.0 2.76e-01 100.0% 58.5%
5078256 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 42.0 2.79e-01 100.0% 59.0%
5003472 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.50 41.0 2.94e-01 100.0% 78.5%
3550365 331.23.1.2 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.50 39.0 3.32e-01 95.0% 56.4%
4934604 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.50 41.0 2.51e-01 100.0% 36.2%
4958290 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.50 40.0 2.47e-01 100.0% 36.2%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.50 38.0 3.37e-01 97.5% 71.2%