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MH744420.1__AYD81653.1__SEA_KROMP_52__00052
Bact-VirMH744420.1__AYD81653.1__SEA_KROMP_52__00052
Identity
- Accession:
- MH744420 ↗
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Taxonomy
TaxID: 2315619
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-104
Domain cluster:
rep: NC_042336.1__YP_009638413.1__FGG38_gp52__00052__D21-92
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02467.22 best | Whib | 55.8 | 7.50e-15 | 65.3% | 95.4% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dodA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.65 | 34.0 | 3.70e-01 | 73.7% | 58.5% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 46.0 | 4.34e-01 | 78.9% | 89.8% |
| 7xuxB01 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.60 | 52.0 | 3.87e-01 | 95.8% | 63.6% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.56 | 36.0 | 3.05e-01 | 100.0% | 39.4% |
| 3sibA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 45.0 | 3.52e-01 | 89.5% | 86.2% |
| 3nv6A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 41.0 | 2.76e-01 | 82.1% | 51.2% |
| 3di2A00 | 1.20.1250.50 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 39.0 | 3.73e-01 | 78.9% | 100.0% |
| 6bz0D01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 3.42e-01 | 95.8% | 82.3% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.51 | 38.0 | 3.94e-01 | 81.1% | 85.1% |
| 1lwdA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.50 | 43.0 | 2.92e-01 | 98.9% | 80.4% |
| 1s4kA00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.50 | 35.0 | 3.27e-01 | 100.0% | 57.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3951668 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.72 | 53.0 | 5.99e-01 | 81.1% | 98.6% |
| 4927487 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.68 | 36.0 | 4.06e-01 | 80.0% | 65.3% |
| 3954362 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.68 | 60.0 | 5.75e-01 | 96.8% | 100.0% |
| 3385696 | 854.1.1.0 ↗ | extended segments › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE | 0.57 | 42.0 | 4.57e-01 | 78.9% | 98.7% |
| 5025269 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.56 | 37.0 | 2.78e-01 | 90.5% | 25.1% |
| 4526133 | 2003.1.2.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase | 0.56 | 50.0 | 3.25e-01 | 100.0% | 44.4% |
| 3990094 | 5086.1.1.94 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD | 0.56 | 38.0 | 3.19e-01 | 78.9% | 40.0% |
D2
high
residues 129-192
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1br2A04 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 46.0 | 3.37e-01 | 89.1% | 24.0% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.71 | 61.0 | 3.86e-01 | 95.3% | 63.7% |
| 2h1jA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.65 | 53.0 | 3.12e-01 | 92.2% | 24.4% |
| 7ztbB01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 46.0 | 3.46e-01 | 82.8% | 32.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3974411 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.81 | 66.0 | 4.51e-01 | 87.5% | 49.8% |
| 5006721 | 547.1.1.9 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › DUF5658 | 0.80 | 57.0 | 4.60e-01 | 76.6% | 40.0% |
| 3937111 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.70 | 48.0 | 3.12e-01 | 71.9% | 17.2% |
| 3596160 | 547.1.1.0 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain | 0.68 | 49.0 | 3.82e-01 | 76.6% | 41.5% |
| 3172593 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.55 | 38.0 | 3.18e-01 | 76.6% | 73.1% |