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MH744420.1__AYD81677.1__SEA_KROMP_76__00076

Bact-Vir

MH744420.1__AYD81677.1__SEA_KROMP_76__00076

Identity

Accession:
MH744420 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-82
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vb5A01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.71 60.0 5.58e-01 98.6% 74.5%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.70 54.0 4.93e-01 84.9% 86.6%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.67 47.0 3.31e-01 72.6% 83.3%
2xkrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.67 58.0 3.67e-01 97.3% 40.8%
3hg9A01 3.30.1300.90 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › PilM protein, N-terminal domain 0.66 49.0 4.89e-01 100.0% 76.6%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 58.0 5.02e-01 100.0% 92.1%
3qz0A00 6.10.250.2300 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 52.0 5.16e-01 100.0% 84.6%
2fgyA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.64 52.0 4.66e-01 100.0% 62.6%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 5.03e-01 91.8% 93.8%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.62 54.0 4.70e-01 100.0% 82.8%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.62 53.0 4.35e-01 100.0% 86.3%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.66e-01 82.2% 100.0%
1d8jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 5.01e-01 93.2% 96.3%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.66e-01 87.7% 100.0%
1aj5A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 46.0 3.55e-01 82.2% 42.8%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 54.0 4.38e-01 100.0% 87.9%
1wn1A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.61 52.0 3.77e-01 100.0% 87.2%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.60 51.0 4.09e-01 100.0% 86.9%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 46.0 4.30e-01 87.7% 81.1%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 53.0 4.38e-01 100.0% 92.3%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 49.0 4.73e-01 97.3% 88.5%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.58 47.0 4.74e-01 93.2% 97.3%
1aj4A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 44.0 3.48e-01 82.2% 43.1%
1scmB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 45.0 4.68e-01 87.7% 95.6%
5f42A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.58 42.0 4.15e-01 87.7% 72.0%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 43.0 3.41e-01 82.2% 42.9%
3cwrB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 49.0 3.66e-01 97.3% 61.6%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 48.0 4.57e-01 97.3% 100.0%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 48.0 3.71e-01 98.6% 63.2%
2aaoB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 43.0 3.53e-01 83.6% 48.9%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.87e-01 83.6% 84.0%
3kevA02 1.10.238.200 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain 0.56 45.0 4.17e-01 97.3% 70.5%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 47.0 4.04e-01 100.0% 89.7%
5c4yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 44.0 3.67e-01 93.2% 61.0%
2bl0B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 41.0 4.23e-01 91.8% 91.2%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 42.0 3.82e-01 86.3% 87.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 43.0 3.72e-01 89.0% 88.9%
1wdcC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 44.0 4.35e-01 95.9% 87.2%
1vljA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.53 44.0 3.14e-01 89.0% 61.6%
2i7aA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 45.0 3.58e-01 100.0% 45.2%
2r2iA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 46.0 4.23e-01 100.0% 80.4%
3pm8B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 44.0 4.23e-01 97.3% 97.6%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.51 41.0 3.37e-01 86.3% 51.5%
3fwbA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 41.0 3.97e-01 94.5% 81.7%
5w1aB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 40.0 3.94e-01 93.2% 80.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3437866 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 5.29e-01 90.4% 72.6%
4133205 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.70 60.0 5.51e-01 98.6% 73.7%
3369911 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 5.12e-01 89.0% 77.8%
5022765 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 5.47e-01 100.0% 92.9%
3470890 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.92e-01 93.2% 92.4%
3857154 101.1.2.151 alpha arrays › HTH › HTH › winged helix domain › COR 0.66 52.0 4.47e-01 87.7% 69.2%
5054742 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.64 51.0 4.92e-01 98.6% 76.5%
3337440 101.1.2.497 alpha arrays › HTH › HTH › winged helix domain › PF25874 0.64 53.0 5.12e-01 94.5% 100.0%
3805545 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.64 51.0 4.28e-01 89.0% 78.5%
3824339 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 49.0 3.83e-01 84.9% 93.3%
4606139 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 5.14e-01 93.2% 97.5%
3422892 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.63 50.0 3.61e-01 89.0% 44.4%
3239645 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.79e-01 86.3% 100.0%
3732236 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 3.67e-01 97.3% 35.2%
3812703 3758.1.1.7 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 0.61 54.0 3.84e-01 100.0% 59.6%
3962000 5069.1.1.104 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Alpha-E 0.61 54.0 4.24e-01 100.0% 94.2%
4972556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.77e-01 93.2% 98.8%
3392391 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.60 51.0 5.07e-01 97.3% 96.0%
3183041 7579.1.1.95 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Hydrolase_4 0.60 52.0 3.46e-01 100.0% 23.7%
4029940 604.5.1.44 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › EMC6 0.60 48.0 4.51e-01 91.8% 88.4%
3695839 101.1.2.160 alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.59 43.0 4.32e-01 78.1% 98.6%
4997192 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.59 48.0 3.36e-01 87.7% 54.2%
4298977 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 46.0 4.51e-01 97.3% 80.0%
4545815 108.1.1.4 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 41.0 3.99e-01 75.3% 74.1%
4012043 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.59 45.0 3.21e-01 84.9% 40.0%
3277489 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.58 44.0 4.11e-01 82.2% 71.6%
4941189 129.1.1.11 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C 0.58 48.0 4.01e-01 93.2% 57.9%
3709962 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 51.0 4.74e-01 100.0% 90.5%
3572425 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.58 34.0 3.46e-01 100.0% 57.1%
3407527 108.1.1.39 alpha arrays › EF-hand › EF-hand-related › EF-hand › P2R3B_EF-hand 0.58 48.0 4.62e-01 100.0% 81.2%
3782436 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.57 48.0 4.70e-01 93.2% 96.2%
4988250 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.57 48.0 3.27e-01 100.0% 74.7%
4982162 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.57 50.0 3.32e-01 97.3% 73.2%
3488368 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 48.0 4.72e-01 98.6% 91.1%
3297600 621.1.1.7 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 0.56 48.0 4.34e-01 95.9% 78.0%
3642655 3640.1.1.2 alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › OPT 0.56 44.0 4.13e-01 87.7% 84.2%
3439762 5059.1.1.16 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › SLC35F 0.56 49.0 3.36e-01 97.3% 97.4%
4927436 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.24e-01 97.3% 100.0%
3618002 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 40.0 3.88e-01 82.2% 65.9%
3411458 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 42.0 3.71e-01 83.6% 63.5%
3779108 108.1.1.68 alpha arrays › EF-hand › EF-hand-related › EF-hand › TPGS1_C 0.56 45.0 3.37e-01 90.4% 52.0%
3605935 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 46.0 4.26e-01 100.0% 72.6%
4960039 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.55 47.0 3.22e-01 100.0% 58.3%
4558393 601.3.1.5 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Alpha-E 0.55 48.0 3.76e-01 100.0% 45.0%
3642518 5059.1.1.33 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, SLC35F 0.55 43.0 2.94e-01 89.0% 65.6%
3899186 108.1.1.1 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.55 40.0 3.93e-01 79.5% 78.8%
3396400 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 44.0 3.68e-01 86.3% 84.0%
3738439 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.54 40.0 4.10e-01 79.5% 88.6%
3736721 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.53 46.0 3.26e-01 100.0% 58.4%
3943307 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 43.0 4.19e-01 94.5% 85.9%
3493536 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 43.0 3.85e-01 100.0% 74.8%
3178547 5059.1.1.3 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.52 45.0 3.03e-01 98.6% 88.8%
4975827 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.51 42.0 2.93e-01 100.0% 59.7%
4056158 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 39.0 3.50e-01 84.9% 76.4%
3839971 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 40.0 2.92e-01 86.3% 39.5%
3948219 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.51 39.0 2.85e-01 84.9% 40.8%
3925082 5059.1.1.5 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.50 42.0 2.99e-01 100.0% 87.2%
D2 high residues 89-112_125-187
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 44.0 3.78e-01 100.0% 36.9%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.74 57.0 5.55e-01 83.9% 89.7%
4kk2B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.71 48.0 3.22e-01 70.1% 35.1%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 50.0 4.81e-01 93.1% 63.7%
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.67 58.0 4.16e-01 100.0% 49.1%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.66 57.0 4.76e-01 100.0% 54.4%
6i3mE01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.65 57.0 4.95e-01 100.0% 83.9%
2wj9B00 3.30.70.3580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein 0.64 44.0 3.69e-01 70.1% 65.5%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 47.0 4.02e-01 81.6% 95.9%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 48.0 4.00e-01 81.6% 87.3%
2q8kA01 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.62 53.0 3.79e-01 100.0% 84.4%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 47.0 4.01e-01 81.6% 96.5%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 47.0 3.94e-01 81.6% 89.9%
1hw1A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.61 53.0 4.52e-01 100.0% 84.8%
3kmiA00 1.20.120.940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Putative aromatic acid exporter, C-terminal domain 0.59 54.0 4.30e-01 100.0% 62.8%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.59 51.0 4.22e-01 95.4% 76.6%
4k84A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.58 46.0 3.56e-01 87.4% 66.5%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.58 41.0 3.66e-01 73.6% 91.9%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 4.78e-01 95.4% 90.2%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.57 43.0 3.44e-01 81.6% 69.3%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 39.0 3.63e-01 72.4% 69.8%
6ne6A01 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.56 40.0 3.68e-01 74.7% 86.8%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 50.0 4.42e-01 100.0% 94.5%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 46.0 4.45e-01 95.4% 81.6%
5jfqB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 47.0 3.31e-01 96.6% 49.3%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.56 50.0 4.81e-01 100.0% 93.9%
4nt1A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.56 44.0 3.44e-01 87.4% 64.0%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.55 47.0 3.25e-01 96.6% 71.0%
3c5wA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 37.0 2.81e-01 80.5% 26.8%
3cz1A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.55 43.0 3.96e-01 87.4% 64.1%
2g3kA00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.54 49.0 4.77e-01 100.0% 95.7%
6wfqC01 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.54 46.0 3.97e-01 96.6% 85.9%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 44.0 4.13e-01 100.0% 73.0%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 38.0 3.53e-01 72.4% 77.4%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.54 42.0 3.85e-01 86.2% 93.2%
4oo2A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 38.0 2.94e-01 74.7% 48.5%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 4.49e-01 100.0% 84.5%
4wk5A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 44.0 3.18e-01 92.0% 60.2%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.53 38.0 3.48e-01 78.2% 90.3%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 42.0 3.74e-01 92.0% 61.2%
4a64A01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 42.0 3.76e-01 92.0% 63.6%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 36.0 3.77e-01 74.7% 81.5%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.52 36.0 3.44e-01 72.4% 63.1%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 46.0 3.85e-01 100.0% 96.7%
3t8vA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.52 42.0 2.87e-01 90.8% 85.3%
4gc0A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 45.0 3.29e-01 100.0% 75.1%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 43.0 3.49e-01 100.0% 64.2%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.50 36.0 3.47e-01 78.2% 86.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048577 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.71 53.0 5.53e-01 79.3% 96.2%
4580730 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.71 48.0 5.47e-01 94.3% 100.0%
4999927 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.71 60.0 5.68e-01 100.0% 78.1%
4396411 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.70 58.0 5.06e-01 100.0% 58.6%
4396592 7064.1.1.3 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › FUSC_2 0.70 58.0 4.86e-01 100.0% 53.3%
4177832 621.1.1.2 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.69 53.0 5.16e-01 83.9% 74.7%
3899802 621.1.1.8 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1 0.69 54.0 5.06e-01 86.2% 90.0%
4941369 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.68 56.0 5.35e-01 100.0% 77.1%
3903366 310.2.1.39 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF25974 0.68 53.0 5.05e-01 86.2% 94.3%
3941077 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.66 51.0 4.34e-01 81.6% 95.7%
3471396 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.66 39.0 3.79e-01 100.0% 53.7%
3802497 109.4.1.1350 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA, PF31007 0.65 48.0 2.70e-01 78.2% 6.7%
3411777 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.65 52.0 5.18e-01 93.1% 84.4%
3244338 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.65 50.0 3.94e-01 81.6% 85.6%
3694772 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.64 47.0 3.98e-01 97.7% 47.1%
3599917 633.24.1.0 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.64 48.0 4.75e-01 79.3% 93.3%
3899958 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.64 40.0 2.65e-01 100.0% 17.5%
4929490 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.63 51.0 5.01e-01 89.7% 95.8%
4313363 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.63 55.0 3.97e-01 97.7% 86.7%
5031268 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.62 54.0 3.93e-01 100.0% 66.2%
3727838 5050.1.1.10 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.62 53.0 3.95e-01 97.7% 86.8%
3874582 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 49.0 5.00e-01 98.9% 92.9%
144613 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.61 46.0 4.05e-01 80.5% 95.4%
3324034 1015.1.1.7 alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Yip1 0.60 48.0 3.92e-01 86.2% 57.0%
4014039 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.60 52.0 3.31e-01 100.0% 59.8%
3513985 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.60 49.0 3.70e-01 92.0% 88.7%
3610065 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.60 42.0 2.93e-01 73.6% 39.5%
3319714 109.4.1.85 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop52 0.60 43.0 3.15e-01 83.9% 26.8%
3911818 3832.1.1.1 alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 0.60 50.0 4.06e-01 92.0% 73.3%
3601959 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 40.0 3.73e-01 79.3% 54.5%
4412956 5048.1.1.1 alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP 0.59 49.0 3.70e-01 92.0% 83.6%
4034377 4982.1.1.2 alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N 0.59 43.0 4.27e-01 83.9% 74.4%
3903917 5058.1.1.17 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › NRN1 0.59 42.0 4.25e-01 74.7% 83.5%
5051570 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.59e-01 95.4% 90.4%
3591589 5050.1.1.28 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › BT1 0.59 49.0 3.82e-01 94.3% 92.5%
3914806 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 46.0 3.81e-01 85.1% 94.8%
3266794 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 49.0 3.74e-01 97.7% 79.6%
4018207 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.57 48.0 4.00e-01 95.4% 70.3%
3977653 601.1.2.88 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MASE2 0.57 43.0 3.43e-01 83.9% 38.9%
3948219 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.57 51.0 3.81e-01 100.0% 58.8%
4946929 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 52.0 3.83e-01 100.0% 58.2%
4134938 601.3.1.14 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PF27870 0.57 51.0 4.67e-01 100.0% 82.6%
3498946 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.56 51.0 3.72e-01 100.0% 59.1%
3601936 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.56 42.0 3.63e-01 80.5% 96.4%
5067071 604.17.1.0 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.56 39.0 4.48e-01 79.3% 96.9%
4609538 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 49.0 4.51e-01 100.0% 75.7%
5053257 601.28.1.1 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › VPS28 0.55 50.0 4.85e-01 98.9% 93.7%
3545528 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.55 43.0 3.25e-01 85.1% 53.6%
4947816 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.55 43.0 4.19e-01 87.4% 83.0%
3256520 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.55 44.0 3.98e-01 89.7% 70.4%
3212004 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.54 48.0 3.90e-01 100.0% 72.4%
4016004 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.54 48.0 3.81e-01 100.0% 70.6%
3578804 5050.1.1.6 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.54 48.0 3.42e-01 100.0% 54.8%
4983838 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.53 37.0 3.62e-01 73.6% 75.0%
4034151 604.39.1.9 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 0.53 43.0 3.21e-01 87.4% 100.0%
3261237 5069.1.1.7 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.52 46.0 3.78e-01 100.0% 80.0%
5080181 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.52 46.0 4.38e-01 100.0% 96.2%
3660883 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 3.00e-01 85.1% 32.1%
3605875 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.52 38.0 3.52e-01 79.3% 87.0%
4032073 604.5.1.3 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C 0.51 45.0 3.66e-01 100.0% 66.5%
3311421 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.51 44.0 3.33e-01 98.9% 94.8%
3824927 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.50 43.0 3.69e-01 100.0% 62.0%