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MH752385.1__AYD80910.1__Ray17_9__00008
Bact-VirMH752385.1__AYD80910.1__Ray17_9__00008
Identity
- Accession:
- MH752385 ↗
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Trautnerviridae›
Splendidredvirus›
Bacillus_phage_Ray17
TaxID: 2315627
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-67
Domain cluster:
rep: OM743306.1__UNA01545.1__MG295_00128__00128__D6-66
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.65 | 55.0 | 4.21e-01 | 100.0% | 90.4% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.64 | 54.0 | 4.95e-01 | 100.0% | 91.3% |
| 1mgpA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.61 | 48.0 | 3.92e-01 | 84.8% | 77.7% |
| 6uqjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 46.0 | 2.95e-01 | 83.3% | 51.6% |
| 3nhqC03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.60 | 43.0 | 3.36e-01 | 75.8% | 72.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.60 | 42.0 | 4.38e-01 | 81.8% | 82.0% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.59 | 42.0 | 3.26e-01 | 75.8% | 74.5% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 49.0 | 4.50e-01 | 100.0% | 89.4% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.58 | 42.0 | 3.39e-01 | 78.8% | 75.7% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.58 | 47.0 | 3.49e-01 | 95.5% | 88.3% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.57 | 39.0 | 4.35e-01 | 98.5% | 100.0% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.55 | 41.0 | 4.15e-01 | 81.8% | 80.6% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.55 | 46.0 | 4.46e-01 | 97.0% | 89.5% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.54 | 38.0 | 2.89e-01 | 75.8% | 63.7% |
| 2z86D02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 42.0 | 2.87e-01 | 89.4% | 23.8% |
| 5cygB00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.52 | 43.0 | 2.94e-01 | 97.0% | 74.3% |
| 2mp4A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 44.0 | 3.37e-01 | 97.0% | 80.0% |
| 4q0jA03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.50 | 36.0 | 2.94e-01 | 80.3% | 38.0% |
| 3v67A01 | 3.30.450.210 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain | 0.50 | 38.0 | 3.28e-01 | 87.9% | 59.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961283 | 101.1.2.935 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C | 0.67 | 51.0 | 4.30e-01 | 81.8% | 77.1% |
| 5029894 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.63 | 54.0 | 4.02e-01 | 93.9% | 44.2% |
| 3723733 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.63 | 45.0 | 2.78e-01 | 77.3% | 14.0% |
| 3966318 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.60 | 43.0 | 2.68e-01 | 77.3% | 13.7% |
| 3340161 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.57 | 40.0 | 2.97e-01 | 75.8% | 61.1% |
| 3401010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 41.0 | 3.45e-01 | 78.8% | 63.5% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 40.0 | 4.11e-01 | 78.8% | 100.0% |
| 3704468 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 40.0 | 3.48e-01 | 83.3% | 96.4% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.53 | 44.0 | 3.23e-01 | 97.0% | 34.5% |
| 3237024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 41.0 | 3.46e-01 | 89.4% | 97.5% |
| 2982157 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.50 | 37.0 | 2.74e-01 | 80.3% | 28.6% |
| None | — | 0.50 | 38.0 | 3.48e-01 | 84.8% | 98.9% | |
| 3205036 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.50 | 43.0 | 3.00e-01 | 98.5% | 36.3% |