←Back to structures

MH766655.1__QDB70134.1__X__00031

Bact-Vir

MH766655.1__QDB70134.1__X__00031

Identity

Accession:
MH766655 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Curvibacter_phage_TJ1

TaxID: 2290809

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-159
PDB
Domain cluster: rep: OL597546.1__UUB23297.1__X__00001__D24-147
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i1rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 3.89e-01 100.0% 72.0%
2h5fB00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 27.0 3.45e-01 100.0% 81.1%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 25.0 3.29e-01 100.0% 84.8%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 32.0 3.56e-01 100.0% 83.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3165956 2007.2.4.10 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › Mu-like_Pro 0.71 68.0 6.66e-01 100.0% 96.4%
4960055 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.65 61.0 6.06e-01 100.0% 95.7%
3721524 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 35.0 3.54e-01 70.7% 91.4%
5044164 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 38.0 3.56e-01 80.5% 97.1%
D2 medium residues 257-348
PDB
Domain cluster: rep: MH673672.2__AYJ74757.1__phiFa_56__00075__D203-291
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ug9A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 44.0 3.37e-01 79.3% 94.2%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 42.0 4.31e-01 79.3% 83.0%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 41.0 3.52e-01 88.0% 48.1%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 2.61e-01 80.4% 52.5%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 41.0 3.46e-01 90.2% 51.4%
1u8vB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 46.0 3.55e-01 100.0% 69.0%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.51 38.0 3.68e-01 80.4% 99.1%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.92e-01 92.4% 98.3%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.50 27.0 3.21e-01 73.9% 79.3%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.46e-01 80.4% 97.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599852 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.61 54.0 3.30e-01 100.0% 69.5%
4067342 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.60 44.0 2.96e-01 77.2% 80.8%
3184467 304.120.1.10 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF25904 0.59 27.0 3.24e-01 76.1% 63.3%
3717770 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.59 41.0 3.08e-01 72.8% 72.3%
4946158 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 48.0 3.66e-01 90.2% 53.2%
3589866 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.56 28.0 2.91e-01 77.2% 48.2%
3409846 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.56 42.0 2.74e-01 82.6% 17.8%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.54 31.0 3.13e-01 72.8% 54.7%
4195219 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 39.0 3.83e-01 78.3% 76.0%
3938493 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.53 32.0 3.30e-01 94.6% 61.1%
5027764 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.52 33.0 3.59e-01 82.6% 78.7%
3785111 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.69e-01 79.3% 80.0%
4586962 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.51 38.0 3.49e-01 79.3% 95.0%
3698817 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.50 37.0 3.53e-01 78.3% 97.3%
1190969 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.50 40.0 3.47e-01 85.9% 78.6%