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MH766655.1__QDB70136.1__X__00033
Bact-VirMH766655.1__QDB70136.1__X__00033
Identity
- Accession:
- MH766655 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Cluster
View cluster (166 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-26_75-140_274-298
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ogkD00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.71 | 36.0 | 3.36e-01 | 78.1% | 38.7% |
| 2e0zA01 | 3.30.2400.20 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.67 | 54.0 | 5.63e-01 | 95.6% | 92.5% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.67 | 35.0 | 3.90e-01 | 75.4% | 63.3% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.64 | 37.0 | 3.93e-01 | 78.1% | 64.0% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 40.0 | 3.87e-01 | 79.8% | 57.8% |
| 3kp0A03 | 3.30.30.60 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | 0.62 | 30.0 | 3.79e-01 | 76.3% | 77.6% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.61 | 45.0 | 4.96e-01 | 83.3% | 93.6% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.60 | 31.0 | 2.93e-01 | 75.4% | 40.1% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.60 | 33.0 | 3.48e-01 | 77.2% | 56.6% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.59 | 33.0 | 3.48e-01 | 77.2% | 59.2% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.58 | 32.0 | 4.05e-01 | 76.3% | 95.3% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 30.0 | 3.20e-01 | 75.4% | 57.4% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 34.0 | 3.57e-01 | 95.6% | 65.1% |
| 4g2uA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.55 | 50.0 | 4.05e-01 | 100.0% | 76.2% |
| 3b8pA00 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.55 | 43.0 | 3.53e-01 | 83.3% | 89.9% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 29.0 | 3.23e-01 | 77.2% | 65.1% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 35.0 | 3.58e-01 | 78.1% | 69.4% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.52 | 40.0 | 3.44e-01 | 79.8% | 91.9% |
| 8dqoB02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 38.0 | 3.02e-01 | 78.1% | 84.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4977616 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.72 | 37.0 | 3.56e-01 | 75.4% | 44.8% |
| 4986875 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.71 | 36.0 | 3.36e-01 | 78.1% | 39.6% |
| 5076457 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.69 | 36.0 | 3.31e-01 | 76.3% | 39.3% |
| 4954449 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.65 | 34.0 | 3.64e-01 | 79.8% | 56.6% |
| 4215969 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.64 | 50.0 | 5.02e-01 | 82.5% | 92.1% |
| 4057787 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.61 | 51.0 | 5.31e-01 | 89.5% | 95.2% |
| 3473931 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.60 | 33.0 | 3.38e-01 | 79.8% | 53.9% |
| 5528 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.60 | 31.0 | 2.93e-01 | 75.4% | 40.1% |
| 3388084 | 872.10.1.0 ↗ | a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain | 0.60 | 38.0 | 4.32e-01 | 77.2% | 85.9% |
| 5079012 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.59 | 32.0 | 2.98e-01 | 77.2% | 40.7% |
| 4022825 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 32.0 | 3.36e-01 | 78.1% | 57.1% |
| 3822140 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.58 | 34.0 | 4.23e-01 | 78.1% | 95.7% |
| 5051461 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 41.0 | 3.56e-01 | 74.6% | 95.3% |
| 5050905 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.57 | 42.0 | 3.51e-01 | 79.8% | 46.3% |
| 4947046 | 882.1.1.0 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 | 0.56 | 32.0 | 2.98e-01 | 79.8% | 41.3% |
| 4464468 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.56 | 32.0 | 3.30e-01 | 79.8% | 56.4% |
| 3808918 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.55 | 30.0 | 3.94e-01 | 75.4% | 100.0% |
| 5385 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.54 | 36.0 | 3.20e-01 | 77.2% | 47.8% |
| 4330176 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.54 | 43.0 | 4.47e-01 | 89.5% | 90.7% |
| 3476800 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.53 | 35.0 | 3.45e-01 | 86.0% | 63.3% |
| 4668047 | 273.1.1.5 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › PF29714 | 0.53 | 47.0 | 4.62e-01 | 98.2% | 97.5% |
| 3176177 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 39.0 | 3.18e-01 | 77.2% | 91.4% |
| 4110761 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.51 | 38.0 | 3.74e-01 | 78.1% | 90.8% |
| 4412399 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.50 | 37.0 | 3.75e-01 | 77.2% | 89.6% |
| 3695949 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.50 | 38.0 | 2.48e-01 | 80.7% | 81.8% |
| 3931023 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 31.0 | 2.40e-01 | 86.0% | 27.7% |
D2
medium
residues 27-48_141-273_299-318
Domain cluster:
rep: NC_062753.1__YP_010357483.1__M1M31_gp41__00041__D163-291_335-364
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03864.23 best | Phage_cap_E | 27.2 | 2.90e-06 | 78.3% | 29.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.86 | 84.0 | 6.77e-01 | 100.0% | 92.2% |
| 3bqwA02 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.67 | 51.0 | 5.69e-01 | 89.1% | 100.0% |
| 6xgpB01 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.64 | 48.0 | 5.41e-01 | 85.1% | 100.0% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.63 | 43.0 | 5.09e-01 | 87.4% | 99.2% |
| 1vx7600 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.53 | 30.0 | 3.78e-01 | 86.9% | 95.9% |
| 1h7mA00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.53 | 29.0 | 3.69e-01 | 86.9% | 93.8% |
| 2aleA00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.53 | 30.0 | 3.44e-01 | 86.9% | 73.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 333200 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.88 | 85.0 | 6.83e-01 | 100.0% | 92.1% |
| 1005479 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.69 | 64.0 | 5.03e-01 | 99.4% | 92.8% |
| 4341655 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.62 | 28.0 | 4.00e-01 | 77.7% | 89.4% |
| 4174586 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.61 | 26.0 | 3.75e-01 | 78.3% | 85.0% |
| 4502816 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.59 | 27.0 | 3.92e-01 | 74.9% | 95.0% |
| 4815223 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.57 | 53.0 | 4.99e-01 | 98.3% | 85.5% |
| 4979417 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.54 | 30.0 | 3.74e-01 | 86.9% | 90.0% |
| 5036109 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.54 | 30.0 | 3.82e-01 | 87.4% | 94.7% |
| 4132915 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.54 | 29.0 | 3.71e-01 | 86.9% | 90.0% |
| 4945907 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.53 | 29.0 | 3.78e-01 | 86.9% | 95.8% |
| 3191592 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.53 | 39.0 | 3.37e-01 | 75.4% | 86.0% |
| 4976170 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.53 | 29.0 | 3.69e-01 | 87.4% | 93.7% |
| 5042414 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.53 | 29.0 | 3.60e-01 | 86.9% | 86.7% |
| 5072822 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.53 | 29.0 | 3.73e-01 | 90.9% | 92.9% |
| 4994706 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.53 | 29.0 | 3.72e-01 | 86.3% | 93.0% |
| 5071066 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.53 | 29.0 | 3.60e-01 | 86.9% | 85.5% |
| 3750412 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.52 | 30.0 | 3.54e-01 | 90.9% | 82.6% |
| 5036431 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.52 | 27.0 | 3.68e-01 | 76.6% | 100.0% |
| 4020468 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.52 | 30.0 | 3.50e-01 | 86.3% | 78.9% |
| 3665482 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.52 | 30.0 | 3.24e-01 | 86.3% | 64.7% |
| 4947090 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.52 | 29.0 | 3.48e-01 | 86.9% | 80.9% |
| 5042525 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.52 | 29.0 | 3.59e-01 | 78.3% | 86.4% |
| 4929226 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.52 | 29.0 | 3.71e-01 | 86.3% | 94.0% |
| 4184655 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.51 | 30.0 | 3.46e-01 | 86.9% | 78.4% |