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MH791406.1__QAX99382.1__PaSz4_1__00001
Bact-VirMH791406.1__QAX99382.1__PaSz4_1__00001
Identity
- Accession:
- MH791406 ↗
- Kingdom:
- phage
Quality
95.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Mesyanzhinovviridae›
Yuavirus›
Pseudomonas_phage_PaSz-4
TaxID: 2419749
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-62
Domain cluster:
rep: MH925093.1__QAY02061.1__VspDsh1_39__00038__D192-274
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nziA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 53.0 | 4.37e-01 | 100.0% | 48.1% |
| 2w5eA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 50.0 | 4.92e-01 | 100.0% | 73.8% |
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 50.0 | 4.37e-01 | 100.0% | 53.3% |
| 2fz0A00 | 3.30.450.230 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Vacuolar R-SNARE Nyv1, longin domain | 0.63 | 42.0 | 3.22e-01 | 70.5% | 60.4% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 48.0 | 3.44e-01 | 100.0% | 28.3% |
| 1wxrA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 44.0 | 2.94e-01 | 100.0% | 18.7% |
| 4ad9A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 46.0 | 3.20e-01 | 82.0% | 75.5% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.59 | 53.0 | 4.30e-01 | 100.0% | 55.7% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.59 | 48.0 | 4.48e-01 | 98.4% | 70.9% |
| 6n36A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 43.0 | 2.96e-01 | 88.5% | 59.2% |
| 1vmeB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 47.0 | 3.19e-01 | 96.7% | 57.8% |
| 5wcmA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 43.0 | 2.93e-01 | 88.5% | 58.9% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.56 | 46.0 | 4.19e-01 | 93.4% | 95.2% |
| 1e5dA02 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 46.0 | 3.18e-01 | 96.7% | 58.3% |
| 2zo4A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 46.0 | 3.13e-01 | 96.7% | 65.5% |
| 4ifaA01 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.55 | 44.0 | 2.94e-01 | 93.4% | 35.5% |
| 2jheA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 44.0 | 3.71e-01 | 91.8% | 85.2% |
| 2q9uB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 44.0 | 3.07e-01 | 96.7% | 58.1% |
| 1xm8A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 45.0 | 3.07e-01 | 96.7% | 46.9% |
| 3mmhA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 44.0 | 3.28e-01 | 95.1% | 59.3% |
| 2p13A00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.53 | 44.0 | 3.98e-01 | 93.4% | 95.3% |
| 4mmnA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 43.0 | 3.42e-01 | 95.1% | 70.2% |
| 3r2uB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 44.0 | 3.03e-01 | 96.7% | 49.6% |
| 3li9A02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 43.0 | 3.41e-01 | 95.1% | 80.4% |
| 2va0A00 | 3.30.450.160 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 41.0 | 3.64e-01 | 91.8% | 72.7% |
| 5w1eA01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 43.0 | 3.16e-01 | 98.4% | 76.5% |
| 6fu4A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 42.0 | 3.19e-01 | 95.1% | 79.1% |
| 3c8cB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 42.0 | 3.35e-01 | 91.8% | 62.2% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 42.0 | 3.84e-01 | 100.0% | 69.9% |
| 3c8cB02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 41.0 | 3.48e-01 | 95.1% | 83.2% |
| 2vzwB00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 40.0 | 3.11e-01 | 90.2% | 73.2% |
| 3cwfA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 41.0 | 3.49e-01 | 93.4% | 69.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 169594 | 1.1.13.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 | 0.59 | 53.0 | 4.30e-01 | 100.0% | 55.7% |
| 3240773 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.59 | 46.0 | 3.23e-01 | 88.5% | 72.6% |
| 3286341 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 46.0 | 3.64e-01 | 88.5% | 61.5% |
| 4939371 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 44.0 | 3.70e-01 | 86.9% | 78.3% |
| 3946118 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.56 | 49.0 | 4.61e-01 | 100.0% | 93.3% |
| 4235970 | 3338.1.1.10 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › Pep_M12B_propep | 0.56 | 38.0 | 3.06e-01 | 72.1% | 92.6% |
| 3603781 | 247.1.1.17 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP | 0.56 | 47.0 | 3.18e-01 | 96.7% | 56.9% |
| 5014465 | 247.1.1.17 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP | 0.56 | 46.0 | 3.16e-01 | 96.7% | 56.9% |
| 4954807 | 247.1.1.17 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP | 0.56 | 46.0 | 3.19e-01 | 96.7% | 59.2% |
| 4945210 | 247.1.1.17 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP | 0.56 | 47.0 | 3.22e-01 | 96.7% | 59.2% |
| 5008689 | 247.1.1.28 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › RMMBL | 0.56 | 45.0 | 3.27e-01 | 93.4% | 55.8% |
| 5017923 | 247.1.1.17 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP | 0.56 | 46.0 | 3.16e-01 | 96.7% | 58.0% |
| 4946112 | 247.1.1.17 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP | 0.56 | 46.0 | 3.19e-01 | 96.7% | 58.8% |
| 4403783 | 247.1.1.17 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP | 0.55 | 46.0 | 3.16e-01 | 96.7% | 57.6% |
| 5043425 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.55 | 44.0 | 3.36e-01 | 91.8% | 70.0% |
| 4178938 | 10.1.1.7 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_11 | 0.55 | 43.0 | 2.92e-01 | 85.2% | 66.1% |
| 4241370 | 217.2.1.1 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC | 0.55 | 45.0 | 4.18e-01 | 93.4% | 97.5% |
| 4928821 | 247.1.1.17 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP | 0.55 | 45.0 | 3.11e-01 | 96.7% | 52.8% |
| 4422116 | 247.1.1.5 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C | 0.55 | 46.0 | 3.12e-01 | 96.7% | 47.3% |
| 5015084 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.54 | 42.0 | 4.24e-01 | 100.0% | 86.7% |
| 5045021 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.53 | 41.0 | 4.18e-01 | 100.0% | 88.3% |
| 3837952 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 42.0 | 3.66e-01 | 95.1% | 82.9% |
| 2499603 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.52 | 34.0 | 3.04e-01 | 70.5% | 44.6% |
| 4004117 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.51 | 34.0 | 2.71e-01 | 100.0% | 28.0% |
| 4154363 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.51 | 45.0 | 3.54e-01 | 100.0% | 49.2% |