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MH809532.1__AYJ74315.1__phiE131_049__00049

Bact-Vir

MH809532.1__AYJ74315.1__phiE131_049__00049

Identity

Accession:
MH809532 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-55
PDB
D2 medium residues 57-107
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 68.0 6.21e-01 100.0% 86.6%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 67.0 6.01e-01 100.0% 88.7%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 66.0 5.39e-01 100.0% 70.2%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 66.0 5.94e-01 98.0% 94.1%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.73 64.0 4.41e-01 96.1% 43.3%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 67.0 5.99e-01 100.0% 95.7%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 62.0 5.00e-01 100.0% 79.2%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 62.0 5.39e-01 100.0% 75.9%
1ulvA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.69 60.0 3.77e-01 98.0% 38.6%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.68 48.0 3.12e-01 74.5% 69.2%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 50.0 3.55e-01 78.4% 96.6%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 57.0 4.52e-01 100.0% 61.4%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.66 56.0 3.76e-01 100.0% 26.7%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.66 56.0 3.70e-01 100.0% 34.2%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.62 45.0 3.69e-01 78.4% 95.8%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.61 45.0 3.77e-01 90.2% 43.9%
4djmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 3.53e-01 72.5% 77.5%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.58 39.0 2.97e-01 70.6% 34.7%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.51e-01 80.4% 64.0%
2jvnA00 3.90.640.80 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.56 38.0 2.87e-01 70.6% 28.6%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.15e-01 100.0% 46.6%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 2.73e-01 90.2% 62.0%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.55 39.0 2.83e-01 76.5% 31.3%
6torA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 45.0 3.38e-01 98.0% 64.6%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 42.0 3.33e-01 86.3% 57.8%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.53 44.0 3.89e-01 96.1% 98.8%
7q4lA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 37.0 2.92e-01 74.5% 72.9%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 42.0 3.17e-01 90.2% 46.7%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.53 41.0 2.48e-01 92.2% 22.2%
2dkhA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 37.0 2.95e-01 76.5% 57.9%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.01e-01 94.1% 37.5%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 41.0 3.10e-01 98.0% 64.2%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.52 39.0 2.33e-01 84.3% 28.4%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.50e-01 94.1% 96.9%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.52 40.0 2.90e-01 96.1% 88.2%
1ni7A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.51 43.0 3.17e-01 100.0% 65.1%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.50 42.0 3.00e-01 100.0% 72.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966261 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.83 70.0 6.44e-01 94.1% 72.3%
4992542 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.82 70.0 6.82e-01 92.2% 85.5%
4967355 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.81 66.0 6.12e-01 94.1% 70.8%
4487255 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.77 70.0 6.11e-01 100.0% 86.7%
3593376 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.77 70.0 5.61e-01 100.0% 69.5%
3505247 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.77 70.0 5.72e-01 100.0% 68.9%
4043415 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 69.0 3.98e-01 100.0% 14.6%
3933098 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.76 69.0 6.32e-01 100.0% 89.2%
1168794 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.76 68.0 5.50e-01 100.0% 61.1%
3619246 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.75 68.0 5.29e-01 100.0% 73.3%
3554081 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.75 67.0 6.20e-01 100.0% 89.2%
3502939 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.75 68.0 5.56e-01 100.0% 68.9%
3333293 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.75 66.0 5.82e-01 100.0% 82.7%
3487251 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.75 67.0 5.73e-01 100.0% 77.5%
5023929 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.75 64.0 5.32e-01 94.1% 65.9%
4319496 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 68.0 6.04e-01 100.0% 94.3%
3216170 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 67.0 5.71e-01 100.0% 92.5%
3825518 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 66.0 5.79e-01 100.0% 84.0%
3940448 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 67.0 4.83e-01 100.0% 71.1%
3994593 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.74 66.0 5.66e-01 100.0% 68.8%
3617638 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 67.0 5.21e-01 100.0% 63.8%
3970166 330.10.1.0 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.73 66.0 5.23e-01 100.0% 61.0%
1323413 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.72 66.0 5.16e-01 100.0% 60.8%
3789865 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 65.0 5.34e-01 100.0% 70.0%
4026012 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.71 62.0 4.69e-01 100.0% 59.2%
4979196 241.1.1.6 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.71 60.0 4.56e-01 98.0% 80.0%
3387312 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.71 56.0 4.03e-01 86.3% 37.9%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 46.0 3.76e-01 100.0% 38.9%
4962375 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.69 53.0 3.90e-01 84.3% 36.3%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 59.0 4.72e-01 100.0% 63.8%
3432658 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 59.0 4.86e-01 100.0% 69.5%
4322168 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.66 56.0 3.65e-01 100.0% 33.6%
3758651 633.23.1.34 alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.66 45.0 3.06e-01 70.6% 24.7%
4166372 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.66 56.0 3.59e-01 100.0% 30.2%
3388321 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.65 54.0 3.72e-01 100.0% 27.5%
3236988 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.64 45.0 3.93e-01 76.5% 100.0%
5038003 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.62 50.0 5.06e-01 92.2% 96.0%
5060852 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.62 48.0 5.05e-01 92.2% 100.0%
5011985 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.62 46.0 4.27e-01 86.3% 61.4%
5076116 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 49.0 3.71e-01 94.1% 37.9%
5062942 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.61 49.0 4.85e-01 90.2% 83.6%
3969097 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.61 49.0 4.94e-01 90.2% 92.0%
5051943 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.61 51.0 3.38e-01 100.0% 32.5%
4980248 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.60 48.0 4.68e-01 92.2% 81.0%
4465073 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 46.0 3.62e-01 82.4% 87.5%
4927967 2003.1.2.297 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.60 48.0 2.83e-01 88.2% 69.3%
4976643 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 48.0 3.73e-01 94.1% 40.8%
4203238 220.1.1.217 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.60 48.0 3.07e-01 88.2% 18.4%
5053495 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 46.0 3.37e-01 92.2% 31.2%
4960622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 46.0 3.89e-01 92.2% 50.5%
4388541 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.58 43.0 3.42e-01 84.3% 42.5%
5043685 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 45.0 4.03e-01 84.3% 92.9%
4996383 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 45.0 3.42e-01 90.2% 38.5%
5040627 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 45.0 3.49e-01 92.2% 39.2%
4954761 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.57 46.0 3.72e-01 98.0% 76.7%
3404845 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 46.0 3.75e-01 88.2% 47.4%
4200272 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.57 45.0 3.92e-01 94.1% 95.6%
4948242 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 3.20e-01 88.2% 32.7%
4977897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 42.0 3.32e-01 90.2% 34.8%
3504193 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.55 40.0 3.08e-01 80.4% 50.8%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.55 44.0 3.42e-01 90.2% 40.0%
3164555 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 43.0 3.24e-01 94.1% 32.0%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 41.0 3.75e-01 82.4% 84.3%
5044666 101.1.8.2 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.55 41.0 2.86e-01 80.4% 48.8%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.54 47.0 4.27e-01 100.0% 94.3%
3221538 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.79e-01 98.0% 30.6%
3302660 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.52 38.0 2.60e-01 84.3% 19.1%
3737927 220.1.1.294 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.52 43.0 3.40e-01 94.1% 63.6%
4994744 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.52 43.0 3.46e-01 96.1% 74.3%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 35.0 3.49e-01 76.5% 72.4%