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MH825698.1__AYD86171.1__SEA_BURRO_28__00028

Bact-Vir

MH825698.1__AYD86171.1__SEA_BURRO_28__00028

Identity

Accession:
MH825698 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burrovirus› Microbacterium_phage_Burro

TaxID: 2315703

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-57
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 4.13e-01 87.7% 60.0%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.02e-01 84.2% 38.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.18e-01 82.5% 48.5%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 3.74e-01 82.5% 34.8%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 3.93e-01 86.0% 37.8%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 3.87e-01 87.7% 66.0%
2nraC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.41e-01 77.2% 81.3%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 3.68e-01 84.2% 35.3%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 3.81e-01 91.2% 70.8%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 3.70e-01 87.7% 65.7%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 3.89e-01 87.7% 82.1%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.58e-01 84.2% 37.1%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.53e-01 82.5% 36.6%
6iubA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 38.0 2.46e-01 86.0% 14.0%
2iw2A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.60 36.0 2.49e-01 93.0% 18.9%
6sc4A00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.59 40.0 2.85e-01 71.9% 22.6%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.59e-01 91.2% 70.6%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 3.41e-01 82.5% 35.6%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.69e-01 78.9% 100.0%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.12e-01 82.5% 31.7%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 38.0 3.62e-01 77.2% 64.7%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.52 34.0 2.75e-01 89.5% 32.5%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.52 35.0 3.11e-01 70.2% 100.0%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 38.0 3.32e-01 84.2% 73.7%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.52 45.0 2.78e-01 96.5% 31.5%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 43.0 2.94e-01 100.0% 70.0%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 35.0 2.79e-01 71.9% 56.5%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 3.46e-01 98.2% 96.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083855 5001.1.1.291 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PAS 0.74 61.0 4.03e-01 91.2% 25.7%
4138755 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.69 55.0 4.08e-01 84.2% 37.0%
3483097 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.67 43.0 3.21e-01 87.7% 28.1%
2324034 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 40.0 2.95e-01 86.0% 22.4%
3588306 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.66 54.0 4.00e-01 87.7% 63.6%
4033334 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 53.0 3.93e-01 87.7% 62.8%
3959325 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.66 40.0 2.83e-01 82.5% 22.7%
3581824 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 33.0 3.08e-01 86.0% 35.7%
3885898 221.1.1.64 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.66 34.0 2.70e-01 78.9% 23.6%
3291221 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.65 54.0 4.05e-01 91.2% 65.7%
3369751 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.65 50.0 3.07e-01 82.5% 14.4%
4082847 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.65 49.0 3.70e-01 82.5% 33.6%
3593736 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.64 52.0 4.23e-01 100.0% 49.0%
3280001 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.64 48.0 3.55e-01 82.5% 31.0%
3288926 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 49.0 3.67e-01 84.2% 34.5%
166472 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 48.0 3.68e-01 84.2% 35.3%
3699463 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 50.0 3.35e-01 100.0% 22.8%
2796357 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 47.0 3.67e-01 91.2% 68.1%
3610391 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 45.0 2.57e-01 100.0% 8.1%
2813624 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 45.0 3.58e-01 91.2% 69.6%
3806096 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 44.0 3.53e-01 87.7% 98.5%
3286725 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 43.0 3.10e-01 82.5% 58.9%
4185372 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.57 49.0 3.12e-01 94.7% 38.4%
3270651 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.56 49.0 3.04e-01 94.7% 32.7%
4877997 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.56 42.0 3.27e-01 91.2% 61.1%
4562142 136.1.1.1 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.56 44.0 2.63e-01 82.5% 37.1%
3288303 5051.1.1.3 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF 0.54 42.0 2.49e-01 87.7% 74.2%
4959043 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.53 42.0 3.19e-01 86.0% 65.4%
5004517 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.53 46.0 3.02e-01 93.0% 91.9%
4022846 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 2.88e-01 93.0% 84.2%
3598390 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 44.0 3.66e-01 93.0% 58.9%
5045582 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.51 41.0 2.58e-01 100.0% 57.3%
3658440 386.1.1.26 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.50 33.0 3.40e-01 78.9% 69.1%
D2 medium residues 58-104_126-152
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.67 36.0 3.59e-01 95.9% 48.1%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 46.0 4.40e-01 93.2% 63.6%
2m3aA00 1.10.10.1900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like 0.61 35.0 3.64e-01 90.5% 58.2%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.59 45.0 3.72e-01 85.1% 56.6%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 37.0 3.96e-01 91.9% 80.3%
1bccH00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.56 41.0 4.30e-01 91.9% 86.4%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 41.0 3.67e-01 79.7% 83.9%
2zy9A03 1.10.357.20 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain 0.55 47.0 3.64e-01 98.6% 76.4%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.54 41.0 3.50e-01 83.8% 50.4%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.52 34.0 3.32e-01 79.7% 57.6%
1t10A01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 45.0 2.91e-01 100.0% 80.5%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 36.0 3.35e-01 91.9% 56.7%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.51 38.0 3.82e-01 97.3% 75.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3257271 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.58 41.0 3.80e-01 73.0% 89.5%
5015263 1085.1.1.0 ↗ few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 0.52 40.0 3.70e-01 100.0% 65.3%
3256155 192.20.1.6 ↗ alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26116 0.51 40.0 3.72e-01 95.9% 66.3%
4026202 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.51 33.0 3.09e-01 81.1% 53.3%
D3 medium residues 105-125_420-535
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.52 27.0 3.37e-01 70.8% 77.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3270180 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.60 29.0 3.53e-01 71.5% 70.0%
D4 medium residues 153-292
PDB
Domain cluster: rep: KF356198.1__AGR48562.1__A4L_35__00035__D190-341
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 34.0 3.63e-01 94.3% 62.6%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 25.0 3.05e-01 71.4% 57.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 26.0 3.53e-01 88.6% 78.4%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 35.0 3.75e-01 93.6% 68.1%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.58 37.0 3.53e-01 100.0% 53.9%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 32.0 3.44e-01 94.3% 63.3%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 34.0 2.89e-01 93.6% 36.3%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.41e-01 85.7% 53.9%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 4.00e-01 85.0% 82.7%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 4.02e-01 87.1% 83.0%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 4.11e-01 92.9% 86.2%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 42.0 3.38e-01 93.6% 47.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3379168 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.76 28.0 4.24e-01 70.7% 77.8%
3171382 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.65 31.0 3.86e-01 72.9% 71.1%
4027491 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.65 43.0 4.80e-01 85.0% 85.5%
1557493 4056.1.1.6 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel 0.58 30.0 3.79e-01 100.0% 84.0%
3259314 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.54 34.0 3.97e-01 92.1% 89.0%
3487147 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 41.0 3.43e-01 82.9% 74.0%
3916301 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 40.0 4.20e-01 87.1% 87.7%
3901954 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 40.0 4.05e-01 86.4% 81.9%
2157212 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.50 40.0 4.12e-01 92.9% 86.2%
3765914 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.50 38.0 3.94e-01 86.4% 83.6%